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Publications

Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M.
NuST: analysis of the interplay between nucleoid organization and gene expression.
Bioinformatics. 28(12), pp.1643-4 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M.
Large-scale dynamics of horizontal transfers.
Mob Genet Elements. 2(3), pp.163-167 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P.
Long-term model predictive control of gene expression at the population and single-cell levels.
Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P.
Patterns of synchronization in the hydrodynamic coupling of active colloids.
Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Depauw FAngelique, Rogato A, Riberà d'Alcalà M, Falciatore A.
Exploring the molecular basis of responses to light in marine diatoms.
J Exp Bot. 63(4), pp.1575-91 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R.
In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2.
Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.
Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.
Nucleic Acids Res. 40(2), pp.530-40 (2012).
Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P.
Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators.
Phys Rev Lett. 109(16), pp.164103 (2012).
Dib L, Carbone A.
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinformatics. 13, pp.194 (2012).
Grassi L, Caselle M, Lercher MJ, Cosentino Lagomarsino M.
Horizontal gene transfers as metagenomic gene duplications.
Mol Biosyst. 8(3), pp.790-5 (2012).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P.
Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain.
FASEB J. 25(10), pp.3426-35 (2011).
Xu Z, Prigent S, Deslys J-P, Rezaei H.
Dual conformation of H2H3 domain of prion protein in mammalian cells.
J Biol Chem. 286(46), pp.40060-8 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM.
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.
Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK.
Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes.
Open Antimicrob. Agents J. 3, pp.23–29 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A.
Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability.
J. Phys. Chem. C. 115, pp.16819–16827 (2011).

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