|
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009). |
|
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res. 19(10), pp.1710-21 (2009). |
|
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M. Feedback topology and XOR-dynamics in Boolean networks with varying input structure. Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009). |
|
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009). |
|
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z. Metabolic diversification of cells during the development of yeast colonies. Environ Microbiol. 11(2), pp.494-504 (2009). |
|
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M. Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009). |
|
Cosentino Lagomarsino M, Bassetti B, Castellani G, Remondini D. Functional models for large-scale gene regulation networks: realism and fiction. Mol Biosyst. 5(4), pp.335-44 (2009). |
|
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T. Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009). |
|
Baussand J, Carbone A*. A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. PLoS Comput Biol. 5(9), pp.e1000488 (2009). |
|
Bernardes JS, Fernandez JH, Vasconcelos ATereza R. Structural descriptor database: a new tool for sequence-based functional site prediction. BMC Bioinformatics. 9, pp.492 (2008). |
|
Costa J, Bernardes JS, Santos V, Zaverucha G Remote Homology Detection Through Discriminative Statistical Relational Learning. in The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. (2008) |
|
Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C. Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress. Biochem J. 414(2), pp.301-11 (2008). |
|
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS. Rapid adaptive amplification of preexisting variation in an RNA virus. J Virol. 82(9), pp.4354-62 (2008). |
|
IM Rouzine, Brunet E, Wilke CO. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor Popul Biol. 73(1), pp.24-46 (2008). |
|
Brunet E, IM Rouzine, Wilke CO. The stochastic edge in adaptive evolution. Genetics. 179(1), pp.603-20 (2008). |
