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Publications

Bruot N, Kotar J, de Lillo F, Cosentino Lagomarsino M, Cicuta P. Driving potential and noise level determine the synchronization state of hydrodynamically coupled oscillators. Phys Rev Lett. 109(16), pp.164103 (2012).
Uhlendorf J, Miermont A, Delaveau T, Charvin G, Fages F, Bottani S, Batt G, Hersen P. Long-term model predictive control of gene expression at the population and single-cell levels. Proc Natl Acad Sci U S A. 109(35), pp.14271-6 (2012).
Benza VG, Bassetti B, Dorfman KD, Scolari VF, Bromek K, Cicuta P, Cosentino Lagomarsino M. Physical descriptions of the bacterial nucleoid at large scales, and their biological implications. Rep Prog Phys. 75(7), pp.076602 (2012).
Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H. Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. Proc Natl Acad Sci U S A. 109(26), pp.E1733-42 (2012).
Dhamgaye S, Devaux F, Manoharlal R, Vandeputte P, Shah AHaseeb, Singh A, Blugeon C, Sanglard D, Prasad R. In vitro effect of malachite green on Candida albicans involves multiple pathways and transcriptional regulators UPC2 and STP2. Antimicrob Agents Chemother. 56(1), pp.495-506 (2012).
Laine E, Auclair C, Tchertanov L. Allosteric communication across the native and mutated KIT receptor tyrosine kinase. PLoS Comput Biol. 8(8), pp.e1002661 (2012).
Agier N, Fischer G. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol. 29(3), pp.905-13 (2012).
Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P. Patterns of synchronization in the hydrodynamic coupling of active colloids. Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M. Large-scale dynamics of horizontal transfers. Mob Genet Elements. 2(3), pp.163-167 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Dib L, Carbone A. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P. Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain. FASEB J. 25(10), pp.3426-35 (2011).
Xu Z, Prigent S, Deslys J-P, Rezaei H. Dual conformation of H2H3 domain of prion protein in mammalian cells. J Biol Chem. 286(46), pp.40060-8 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A. Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability. J. Phys. Chem. C. 115, pp.16819–16827 (2011).

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