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Publications

Cocco S, Monasson R, Weigt M.
From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction.
PLoS Comput Biol. 9(8), pp.e1003176 (2013).
Agier N, Romano OMaria, Touzain F, Cosentino Lagomarsino M, Fischer G.
The spatiotemporal program of replication in the genome of Lachancea kluyveri.
Genome Biol Evol. 5(2), pp.370-88 (2013).
Gherardi M, Mandrà S, Bassetti B, Cosentino Lagomarsino M.
Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.
Proc Natl Acad Sci U S A. 110(52), pp.21054-8 (2013).
Zarei M, Sclavi B, Cosentino Lagomarsino M.
Gene silencing and large-scale domain structure of the E. coli genome.
Mol Biosyst. 9(4), pp.758-67 (2013).
Javer A, Long Z, Nugent E, Grisi M, Siriwatwetchakul K, Dorfman KD, Cicuta P, Cosentino Lagomarsino M.
Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization.
Nat Commun. 4, pp.3003 (2013).
Lepetit B, Sturm S, Rogato A, Gruber A, Sachse M, Falciatore A, Kroth PG, Lavaud J.
High light acclimation in the secondary plastids containing diatom Phaeodactylum tricornutum is triggered by the redox state of the plastoquinone pool.
Plant Physiol. 161(2), pp.853-65 (2013).
Mathelier A, Carbone A.
Large scale chromosomal mapping of human microRNA structural clusters.
Nucleic Acids Res. 41(8), pp.4392-408 (2013).
Lopes A, Sacquin-Mora S, Dimitrova V, Laine E, Ponty Y, Carbone A.
Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information.
PLoS Comput Biol. 9(12), pp.e1003369 (2013).
Huysman MJJ, Fortunato AE, Matthijs M, Costa BSchellenbe, Vanderhaeghen R, Van den Daele H, Sachse M, Inzé D, Bowler C, Kroth PG, Wilhelm C, Falciatore A, Vyverman W, De Veylder L.
AUREOCHROME1a-mediated induction of the diatom-specific cyclin dsCYC2 controls the onset of cell division in diatoms (Phaeodactylum tricornutum).
Plant Cell. 25(1), pp.215-28 (2013).
Hanein S, Garcia M, Fares-Taie L, Serre V, De Keyzer Y, Delaveau T, Perrault I, Delphin N, Gerber S, Schmitt A, Masse J-M, Munnich A, Kaplan J, Devaux F, Rozet J-M.
TMEM126A is a mitochondrial located mRNA (MLR) protein of the mitochondrial inner membrane.
Biochim Biophys Acta. 1830(6), pp.3719-33 (2013).
Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, Sander C.
Perturbation biology: inferring signaling networks in cellular systems.
PLoS Comput Biol. 9(12), pp.e1003290 (2013).
Bedhomme M, Adamo M, Marchand CH, Couturier J, Rouhier N, Lemaire SD, Zaffagnini M, Trost P
Glutathionylation of cytosolic glyceraldehyde-3-phosphate dehydrogenase from the model plant Arabidopsis thaliana is reversed by both glutaredoxins and thioredoxins in vitro.
(2012)
Zaffagnini M, Bedhomme M, Groni H, Marchand CH, Puppo C, Gontero B, Cassier-Chauvat C, Decottignies P, Lemaire SD.
Glutathionylation in the photosynthetic model organism Chlamydomonas reinhardtii: a proteomic survey.
Mol Cell Proteomics. 11, pp.M111 014142 (2012).
Zaffagnini M, Bedhomme M, Lemaire SD, Trost P.
The emerging roles of protein glutathionylation in chloroplasts.
Plant Sci. 185-186, pp.86-96 (2012).
Zaffagnini M, Bedhomme M, Marchand CH, Couturier JR, Gao XH, Rouhier N, Trost P, Lemaire SD.
Glutaredoxin s12: unique properties for redox signaling.
Antioxid Redox Signal. 16, pp.17-32 (2012).

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