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Publications

Ye S, Zaitseva E, Caltabiano G, Schertler GFX, Sakmar TP, Deupi X, Vogel R. Tracking G-protein-coupled receptor activation using genetically encoded infrared probes. Nature. 464(7293), pp.1386-9 (2010).
Pakdaman K, Perthame B, Salort D. Dynamics of a structured neuron population. Nonlinearity. 23, pp.55 (2010).
Bernicot F, Maury B, Salort D. A 2-adic approach of the human respiratory tree. ArXiv e-prints. (2010).
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LDW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backstrom N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Volker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang S-P, Li XC, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, et al.. The genome of a songbird. Nature. 464(7289), pp.757 - 762 (2010).
Bradde S, Weigt M, Braunstein A, Zecchina R, Tria F, Mahmoudi H. Aligning graphs and finding substructures by message passing. Europhys. Lett. . 89(37009), (2010).
Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Haas SA, Yaspo M-L. Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Res. 38(10), pp.e112 (2010).
Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
Mathelier A, Carbone A. MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics. 26(18), pp.2226-34 (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M. Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains. Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Kotar J, Leoni M, Bassetti B, Cosentino Lagomarsino M, Cicuta P. Hydrodynamic synchronization of colloidal oscillators. Proc Natl Acad Sci U S A. 107(17), pp.7669-73 (2010).
Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget F-Y, Bowler C. Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes. Plant Cell Environ. 33(10), pp.1614-26 (2010).
Pierobon P, Miné-Hattab J, Cappello G, Viovy J-L, Cosentino Lagomarsino M. Separation of time scales in one-dimensional directed nucleation-growth processes. Phys Rev E Stat Nonlin Soft Matter Phys. 82(6 Pt 1), pp.061904 (2010).
Mathelier A, Carbone A. Chromosomal periodicity and positional networks of genes in Escherichia coli. Mol Syst Biol. 6, pp.366 (2010).
Garcia M, Delaveau T, Goussard S, Jacq C. Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA. EMBO Rep. 11(4), pp.285-91 (2010).
Jourdren L, Delaveau T, Marquenet E, Jacq C, Garcia M. CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses. RNA. 16(7), pp.1301-7 (2010).

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