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Publications

Leone M, Weigt M.
Clustering by soft-constraint affinity propagation: applications to gene-expression data.
Bioinformatics. 23(20), pp.2708-15 (2007).
Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F.
The central role of PDR1 in the foundation of yeast drug resistance.
J Biol Chem. 282(7), pp.5063-74 (2007).
IM Rouzine, Sergeev RA, Glushtsov AI.
Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus.
Proc Natl Acad Sci U S A. 103(3), pp.666-71 (2006).
Sacquin-Mora S, Lavery R, Trojan LA, Carbone A
Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels.
in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)
Cosentino Lagomarsino M, Jona P, Bassetti B
Randomization and feedback properties of directed graphs inspired by gene networks.
in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Koszul R, Dujon B, Fischer G.
Stability of large segmental duplications in the yeast genome.
Genetics. 172(4), pp.2211-22 (2006).
Carbone A.
Computational prediction of genomic functional cores specific to different microbes.
J Mol Evol. 63(6), pp.733-46 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D.
Microarray detection of novel nuclear RNA substrates for the exosome.
Yeast. 23(6), pp.439-54 (2006).
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B.
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages.
PLoS Genet. 2(3), pp.e32 (2006).
Sclavi B, Zaychikov E, Rogozina A, Walther F, Buckle M, Heumann H.
Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.
Proc Natl Acad Sci U S A. 102(13), pp.4706-11 (2005).
IM Rouzine, Coffin JM.
Evolution of HIV Under Selection and Weak Recombination.
Genetics. (2005).
IM Rouzine, Coffin JM.
Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination.
Genetics. 170(1), pp.7 - 18 (2005).
Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K.
Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface.
Nano Lett. 5(9), pp.1658-67 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L.
Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.
Biochemistry. 44(37), pp.12329-43 (2005).
Carbone A.
Pathways of deduction.
Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).

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