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Publications

Mathelier A, Carbone A. Chromosomal periodicity and positional networks of genes in Escherichia coli. Mol Syst Biol. 6, pp.366 (2010).
Garcia M, Delaveau T, Goussard S, Jacq C. Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA. EMBO Rep. 11(4), pp.285-91 (2010).
Fusco D, Grassi L, Bassetti B, Caselle M, Cosentino Lagomarsino M. Ordered structure of the transcription network inherited from the yeast whole-genome duplication. BMC Syst Biol. 4, pp.77 (2010).
Bailleul B, Rogato A, De Martino A, Coesel S, Cardol P, Bowler C, Falciatore A, Finazzi G. An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light. Proc Natl Acad Sci U S A. 107(42), pp.18214-9 (2010).
Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D, Dagand E, Rasche A, Lehrach H, Vingron M, Haas SA, Yaspo M-L. Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Res. 38(10), pp.e112 (2010).
Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M. Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains. Phys Rev E Stat Nonlin Soft Matter Phys. 81(2 Pt 1), pp.021919 (2010).
Kotar J, Leoni M, Bassetti B, Cosentino Lagomarsino M, Cicuta P. Hydrodynamic synchronization of colloidal oscillators. Proc Natl Acad Sci U S A. 107(17), pp.7669-73 (2010).
Heijde M, Zabulon G, Corellou F, Ishikawa T, Brazard J, Usman A, Sanchez F, Plaza P, Martin M, Falciatore A, Todo T, Bouget F-Y, Bowler C. Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes. Plant Cell Environ. 33(10), pp.1614-26 (2010).
Pierobon P, Miné-Hattab J, Cappello G, Viovy J-L, Cosentino Lagomarsino M. Separation of time scales in one-dimensional directed nucleation-growth processes. Phys Rev E Stat Nonlin Soft Matter Phys. 82(6 Pt 1), pp.061904 (2010).
Mathelier A, Carbone A. MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics. 26(18), pp.2226-34 (2010).
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. PLoS Comput Biol. 5(1), pp.e1000267 (2009).
Ye S, Huber T, Vogel R, Sakmar TP. FTIR analysis of GPCR activation using azido probes. Nat Chem Biol. 5(6), pp.397 - 399 (2009).
Maury B, Salort D, Vannier C. Trace theorems for trees and application to the human lungs. NHM. pp.469-500 (2009).
Salort D. TRANSPORT EQUATIONS WITH UNBOUNDED FORCE FIELDS AND APPLICATION TO THE VLASOV–POISSON EQUATION. Mathematical Models and Methods in Applied Sciences. 19, pp.199-228 (2009).

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