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Publications

Kuthan M, Devaux F, Janderová B, Slaninova I, Jacq C, Palková Z. Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology. Mol Microbiol. 47(3), pp.745-54 (2003).
Wenner T, Roth V, Fischer G, Fourrier C, Aigle B, Decaris B, Leblond P. End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens. Mol Microbiol. 50(2), pp.411-25 (2003).
Merendino L, Falciatore A, Rochaix J-D. Expression and RNA binding properties of the chloroplast ribosomal protein S1 from Chlamydomonas reinhardtii. Plant Mol Biol. 53(3), pp.371-82 (2003).
Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A*, Gromov M. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS. 7(3), pp.253-68 (2003).
Richard H, Nuel G. SPA: Simple web tool to assess statistical significance of DNA patterns. Nucleic Acids Res. 31(13), pp.3679-81 (2003).
Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C. Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon. J Biol Chem. 278(52), pp.52641-50 (2003).
Cosentino Lagomarsino M, Jona P, Bassetti B. Metachronal waves for deterministic switching two-state oscillators with hydrodynamic interaction. Phys Rev E Stat Nonlin Soft Matter Phys. 68(2 Pt 1), pp.021908 (2003).
Robelin D, Richard H, Prum B. SIC: A tool to detect short inverted segments in a biological sequence. Nucleic Acids Res. 31(13), pp.3669-71 (2003).
Carbone A*, Zinovyev A, Képès F. Codon adaptation index as a measure of dominating codon bias. Bioinformatics. 19(16), pp.2005-15 (2003).
Cosentino Lagomarsino M, Capuani F, Lowe C P. A simulation study of the dynamics of a driven filament in an Aristotelian fluid. ArXiv Physics e-prints. (2002).
Falciatore A, Formiggini F, Bowler C Reporter genes for plant cells. in Molecular Plant Biology: A Pratical Approach. 2, pp. 265 - 283 (2002)
Cosentino Lagomarsino M, Bassetti B, Jona P. Rowers coupled hydrodynamically. Modeling possible mechanisms for the cooperation of cilia. The European Physical Journal B-Condensed Matter and Complex Systems. 26, pp.81–88 (2002).
Carbone A*, Seeman NC. A route to fractal DNA-assembly. Natural Computing. 1, pp.469–480 (2002).
Devaux F, Carvajal E, Moye-Rowley S, Jacq C. Genome-wide studies on the nuclear PDR3-controlled response to mitochondrial dysfunction in yeast. FEBS Lett. 515(1-3), pp.25-8 (2002).
Carbone A*, Seeman NC. Circuits and programmable self-assembling DNA structures. Proc Natl Acad Sci U S A. 99(20), pp.12577-82 (2002).

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