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Publications

Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D. THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell. 135(2), pp.308-21 (2008).
Bernardes JS, Dávila AMR, Costa VS, Zaverucha G. Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinformatics. 8, pp.435 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM. Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model. Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM. Highly fit ancestors of a partly sexual haploid population. Theor Popul Biol. 71(2), pp.239-50 (2007).
Baussand J, Carbone A. Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques. Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007).
Breton J, Bart-Delabesse E, Biligui S, Carbone A, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M. New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon. Journal of Clinical Microbiology. 45, pp.2580-2589 (2007).
Cosentino Lagomarsino M, Sellerio A, Isambert H, Bassetti B A large-scale evolutionary approach to the analysis of transcription networks. in SYSBIOHEALTH Symposium. Milano. Locomia Innovazione Publ. . (2007)
Montsant A, Allen AE, Coesel S, De Martino A, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, Davis AK, Thamatrakoln K, Hadi MZ, Lane TW, J. Lippmeier C, Martinez D, Parker MS, Pazour GJ, Saito MA, Rokhsar DS, E. Armbrust V, Bowler C. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. Journal of Phycology. 43, pp.585–604 (2007).
Bassetti F, Cosentino Lagomarsino M, Mandrà S. Exchangeable random networks. Internet Mathematics. 4, pp.357–400 (2007).
Lacoste D, Cosentino Lagomarsino M, Joanny JF. Fluctuations of a driven membrane in an electrolyte. EPL (Europhysics Letters). 77, pp.18006 (2007).
Carbone A Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification. in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007)
Baussand J, Deremble C, Carbone A. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins. Proteins. 67(3), pp.695-708 (2007).
Llopis I, Pagonabarraga I, Cosentino Lagomarsino M, Lowe CP. Sedimentation of pairs of hydrodynamically interacting semiflexible filaments. Phys Rev E Stat Nonlin Soft Matter Phys. 76(6 Pt 1), pp.061901 (2007).
Leone M, Weigt M. Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinformatics. 23(20), pp.2708-15 (2007).
Bassetti F, Cosentino Lagomarsino M, Bassetti B, Jona P. Random networks tossing biased coins. Phys Rev E Stat Nonlin Soft Matter Phys. 75(5 Pt 2), pp.056109 (2007).

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