Bernardes JS, Vieira FRJ, Zaverucha G, Carbone A*. A multi-objective optimization approach accurately resolves protein domain architectures. Bioinformatics. (2015). |
Gillet-Markowska A, Louvel G, Fischer G. bz-rates: A Web Tool to Estimate Mutation Rates from Fluctuation Analysis. G3: Genes|Genomes|Genetics. (2015). |
Gillet-Markowska A, Richard H, Fischer G, Lafontaine I. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinformatics. 31(6), pp.801-8 (2015). |
Merhej J, Delaveau T, Guitard J, Palancade B, Hennequin C, Garcia M, Lelandais G, Devaux F. Yap7 is a Transcriptional Repressor of Nitric Oxide Oxidase in Yeasts, which arose from Neofunctionalization after Whole Genome Duplication. Mol Microbiol. (2015). |
Figliuzzi M, De Martino A, Marinari E. RNA-Based Regulation: Dynamics and Response to Perturbations of Competing RNAs. Biophysical Journal. 107(4), pp.1011-1022 (2015). |
Zamparo M, Chianale F, Tebaldi C, Cosentino Lagomarsino M, Nicodemi M, Gamba A. Dynamic membrane patterning, signal localization and polarity in living cells. Soft matter. 11, pp.838–849 (2015). |
Scolari VF, Cosentino Lagomarsino M. Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid. Soft Matter. 11, pp.1677-1687 (2015). |
Bernardes JS, Vieira F, Costa L, Zaverucha G. Evaluation and improvements of clustering algorithms for detecting remote homologous protein families. BMC Bioinformatics. 16(1), pp.34 (2015). |
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J. Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast. Molecular Biology and Evolution. 32(1), (2015). |
Fumagalli MR, Osella M, Thomen P, Heslot F, Cosentino Lagomarsino M. Speed of evolution in large asexual populations with diminishing returns. Journal of Theoretical Biology. 365, pp.23-31 (2015). |
Fortunato AE, Annunziata R, Jaubert M, Bouly J-P, Falciatore A. Dealing with light: The widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms. J Plant Physiol. 172, pp.42-54 (2015). |
Pérez-Martin M, Perez-Perez ME, Lemaire SD, Crespo JL. Oxidative stress contributes to autophagy induction in response to endoplasmic reticulum stress in Chlamydomonas reinhardtii. Plant Physiol. 166, pp.997-1008 (2014). |
Perez-Perez ME, Zaffagnini M, Marchand CH, Crespo JL, Lemaire SD. The yeast autophagy protease Atg4 is regulated by thioredoxin. Autophagy. 10, pp.1953-64 (2014). |
Veyel D, Sommer F, Muranaka LS, Rutgers M, Lemaire SD, Schroda M. In vitro characterization of bacterial and chloroplast Hsp70 systems reveals an evolutionary optimization of the co-chaperones for their Hsp70 partner. Biochem J. 460, pp.13-24 (2014). |
de Paepe R, Lemaire SD, Danon A. Cardiolipin at the heart of stress response across kingdoms. Plant Signal Behav. 9, pp.e29228 (2014). |