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Publications

Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P. Patterns of synchronization in the hydrodynamic coupling of active colloids. Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M. Large-scale dynamics of horizontal transfers. Mob Genet Elements. 2(3), pp.163-167 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Dib L, Carbone A*. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012).
Scolari VF, Zarei M, Osella M, Cosentino Lagomarsino M. NuST: analysis of the interplay between nucleoid organization and gene expression. Bioinformatics. 28(12), pp.1643-4 (2012).
Bottinelli A, Bassetti B, Cosentino Lagomarsino M, Gherardi M. Influence of homology and node age on the growth of protein-protein interaction networks. Phys Rev E Stat Nonlin Soft Matter Phys. 86(4 Pt 1), pp.041919 (2012).
Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M. Joint scaling laws in functional and evolutionary categories in prokaryotic genomes. Nucleic Acids Res. 40(2), pp.530-40 (2012).
Depauw FAngelique, Rogato A, Riberà d'Alcalà M, Falciatore A. Exploring the molecular basis of responses to light in marine diatoms. J Exp Bot. 63(4), pp.1575-91 (2012).
Xu Z, Prigent S, Deslys J-P, Rezaei H. Dual conformation of H2H3 domain of prion protein in mammalian cells. J Biol Chem. 286(46), pp.40060-8 (2011).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P. Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain. FASEB J. 25(10), pp.3426-35 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A. Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability. J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK. Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes. Open Antimicrob. Agents J. 3, pp.23–29 (2011).
Carbone A*, Dib L. Co-evolution and information signals in biological sequences. Theoretical Computer Science. 412, pp.2486 - 2495 (2011).
Procaccini A, Lunt B, Szurmant H, Hwa T, Weigt M. Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks. Rattray M (Eds.). PLoS One. 6, pp.e19729 (2011).

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