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Publications

Cosentino Lagomarsino M, Jona P, Bassetti B Randomization and feedback properties of directed graphs inspired by gene networks. in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Carbone A*. Computational prediction of genomic functional cores specific to different microbes. J Mol Evol. 63(6), pp.733-46 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D. Microarray detection of novel nuclear RNA substrates for the exosome. Yeast. 23(6), pp.439-54 (2006).
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet. 2(3), pp.e32 (2006).
Koszul R, Dujon B, Fischer G. Stability of large segmental duplications in the yeast genome. Genetics. 172(4), pp.2211-22 (2006).
IM Rouzine, Coffin JM. Evolution of HIV Under Selection and Weak Recombination. Genetics. (2005).
IM Rouzine, Coffin JM. Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination. Genetics. 170(1), pp.7 - 18 (2005).
Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K. Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface. Nano Lett. 5(9), pp.1658-67 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L. Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions. Biochemistry. 44(37), pp.12329-43 (2005).
Carbone A*, Pierce N (Eds.)DNA Computing. Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).
Carbone A*. Pathways of deduction. Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).
Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H. seq++: analyzing biological sequences with a range of Markov-related models. Bioinformatics. 21, pp.2783-2784 (2005).
Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA. 11(6), pp.928-38 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B. The large-scale logico-chemical structure of a transcriptional regulation network. eprint arXiv:q-bio/0502017. (2005).
Carbone A*. Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison. Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005).

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