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Publications

Martin H, Doumic M, Teixeira MTeresa, Xu Z. Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae. Cell Biosci. 11(1), pp.180 (2021).
Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A, Whitfield ZJ, Rouzine IM, Bianco S, Andino R. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. bioRxiv. (2021).
Sokolovska N, Mohseni-Behbahani Y. Vanishing boosted weights: a consistent algorithm to learn interpretable rules. Pattern Recognition Letters. (2021).
Chen R, Droux M, Goyer A, Hirel B, Hodges M, Issakidis-Bourguet E, Jacquot J-P, De Lamotte F, Lemaire SD, Lemaire-Chamley M, Miginiac-Maslow M, Sugiyama T, Suzuki A, Vidal J Chapter Three - Scientific contributions of Pierre Gadal and his lab—A tribute to Pierre Gadal (1938–2019). in Past, Current and Future Topics. 100, Academic Press. pp. 41-127 (2021)
Rodriguez-Horta E, Weigt M. On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins. PLOS Computational Biology. 17, pp.1-17 (2021).
Le Moigne T, Gurrieri L, Crozet P, Marchand CH, Zaffagnini M, Sparla F, Lemaire SD, Henri J. Crystal structure of chloroplastic thioredoxin z defines a type-specific target recognition. The Plant Journal. 107, pp.434-447 (2021).
Rodriguez-Horta E, Lage A, Weigt M, Barrat-Charlaix P. Global multivariate model learning from hierarchically correlated data. J. Stat. Mech. (2021).
Pérez-Pérez MEsther, Lemaire SD, Crespo JL. The ATG4 protease integrates redox and stress signals to regulate autophagy. Journal of Experimental Botany. 72, pp.3340-3351 (2021).
Barrat-Charlaix P, Muntoni AP, Shimagaki K, Weigt M, Zamponi F. Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families. Phys. Rev. E. 104, pp.024407 (2021).
Roret T, Zhang B, Moseler A, Dhalleine T, Gao X-H, Couturier J, Lemaire SD, Didierjean C, Johnson MK, Rouhier N. Atypical Iron-Sulfur Cluster Binding, Redox Activity and Structural Properties of Chlamydomonas reinhardtii Glutaredoxin 2. Antioxidants. 10, pp.803 (2021).
Zea DJavier, Laskina S, Baudin A, Richard H, Laine E. Assessing conservation of alternative splicing with evolutionary splicing graphs. Genome Res. 31(8), pp.1462-1473 (2021).
Laine E, Eismann S, Elofsson A, Grudinin S. Protein sequence-to-structure learning: Is this the end(-to-end revolution)?. Proteins: Structure, Function, and Bioinformatics. (2021).
Colas C, Laine E. Targeting Solute Carrier Transporters through Functional Mapping. Trends Pharmacol Sci. 42(1), pp.3-6 (2021).
Roux P, Salort D, Xu Z. Adaptation to DNA damage as a bet-hedging mechanism in a fluctuating environment. R Soc Open Sci. 8(8), pp.210460 (2021).
Pérez-Vargas J§, Teppa E§, Amirache F, Boson B, R de Oliveira R, Combet C, Böckmann A, Fusil F, Freitas N, Carbone A*, Cosset FL*. A fusion peptide in preS1 and the human protein-disulfide isomerase ERp57 are involved in HBV membrane fusion process. eLife. (2021).

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