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Publications

Raible F, Falciatore A. It's about time: rhythms as a new dimension of molecular marine research. Mar Genomics. 14, pp.1-2 (2014).
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S. Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae. PLoS One. 9(11), pp.e111589 (2014).
Mirauta B, Nicolas P, Richard H. Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models. Bioinformatics. 30(10), pp.1409-16 (2014).
Javer A, Kuwada NJ, Long Z, Benza VG, Dorfman KD, Wiggins PA, Cicuta P, Cosentino Lagomarsino M. Persistent super-diffusive motion of Escherichia coli chromosomal loci. Nat Commun. 5, pp.3854 (2014).
Bowler C, Falciatore A. The molecular life of diatoms. Mar Genomics. (2014).
Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, J Martin A, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJin, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CYL, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WChan, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WRose, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, Chandrasegaran S. Total synthesis of a functional designer eukaryotic chromosome. Science. 344(6179), pp.55-8 (2014).
Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A. The Cryptochrome/Photolyase Family in aquatic organisms. Mar Genomics. 14, pp.23-37 (2014).
de Beauchêne IChauvot, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L. Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity. PLoS Comput Biol. 10(7), pp.e1003749 (2014).
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A*, Hess WR, Falciatore A. The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. BMC Genomics. 15, pp.698 (2014).
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Cosentino Lagomarsino M, Keyser UF, Cicuta P. Bacterial nucleoid structure probed by active drag and resistive pulse sensing. Integr Biol (Camb). 6(2), pp.184-91 (2014).
Daboussi F, Leduc S, Maréchal A, Dubois G, Guyot V, Perez-Michaut C, Amato A, Falciatore A, Juillerat A, Beurdeley M, Voytas DF, Cavarec L, Duchateau P. Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology. Nat Commun. 5, pp.3831 (2014).
Sarti E, Zamuner S, Cossio P, Laio A, Seno F, Trovato A. BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. Computer Physics Communications. 184(12), pp.2860 - 2865 (2013).
Bernardes JS, Pedreira CE. A Review of Protein Function Prediction Under Machine Learning Perspective. (2013).
Michelet L, Roach T, Fischer BB, Bedhomme M, Lemaire SD, Krieger-Liszkay A. Down-regulation of catalase activity allows transient accumulation of a hydrogen peroxide signal in Chlamydomonas reinhardtii. Plant Cell Environ. 36, pp.1204-13 (2013).
Zaffagnini M, Morisse S, Bedhomme M, Marchand CH, Festa M, Rouhier N, Lemaire SD, Trost P. Mechanisms of nitrosylation and denitrosylation of cytoplasmic glyceraldehyde-3-phosphate dehydrogenase from Arabidopsis thaliana. J Biol Chem. 288, pp.22777-89 (2013).

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