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Publications

Drillon G, Carbone A, Fischer G.
SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes.
PLoS One. 9(3), pp.e92621 (2014).
Champeimont R, Carbone A.
SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis.
BMC Bioinformatics. 15, pp.391 (2014).
Mandrà S, Cosentino Lagomarsino M, Gherardi M.
Soft bounds on diffusion produce skewed distributions and Gompertz growth.
Phys. Rev. E. 90, pp.032805 (2014).
Long Z, Olliver A, Brambilla E, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.
Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy.
Analyst. 139, pp.5254-5262 (2014).
Bretes H, Rouviere JO, Leger T, Oeffinger M, Devaux F, Doye V, Palancade B.
Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs.
Nucleic Acids Res. 42(8), pp.5043-58 (2014).
Pakdaman K, Perthame B, Salort D.
Adaptation and fatigue model for neuron networks and large time asymptotics in a nonlinear fragmentation equation.
Journal of Mathematical Neurosciences. 4(14), (2014).
Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.
Filling annotation gaps in yeast genomes using genome-wide contact maps.
Bioinformatics. 30(15), pp.2105-13 (2014).
Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès J-C, Collin C, Lasne F, Benusiglio PR, de Paillerets BBressac-, Feunteun J, Lazar V, Gimenez-Roqueplo A-P, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B.
Genetic Evidence of a Precisely Tuned Dysregulation in the Hypoxia Signaling Pathway during Oncogenesis.
Cancer Res. 74(22), pp.6554-64 (2014).
Merhej J, Frigo A, Le Crom S, Camadro J-M, Devaux F, Lelandais G.
bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.
Yeast. 31, pp.375–391 (2014).
Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H.
Fiona: a parallel and automatic strategy for read error correction.
Bioinformatics. 30(17), pp.i356-63 (2014).
Osella M, Nugent E, Cosentino Lagomarsino M.
Concerted control of Escherichia coli cell division.
Proc Natl Acad Sci U S A. 111(9), pp.3431-5 (2014).
Gomes PDa Silva F, Panel N, Laine E, Pascutti PGelado, Solary E, Tchertanov L.
Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication.
PLOS ONE. 9(5), (2014).
Mathelier A, Carbone A.
Predicted human structural clusters of miRNAs target cancer genes.
Atlas Genet Cytogenet Oncol Haematol. (2014).
Carbone A
Extracting Coevolving Characters from a Tree of Species.
in Discrete and Topological Models in Molecular Biology. Springer Berlin Heidelberg. pp. 45-65 (2014)
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Cosentino Lagomarsino M, Keyser UF, Cicuta P.
Bacterial nucleoid structure probed by active drag and resistive pulse sensing.
Integr Biol (Camb). 6(2), pp.184-91 (2014).

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