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Publications

IM Rouzine, Rodrigo A, Coffin JM. Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol Mol Biol Rev. 65(1), pp.151-85 (2001).
Gromov M, Carbone A. Mathematical slices of molecular biology. La Gazette des Mathématiciens, Société Mathématique de France, special edition. pp.11-80 (2001).
Devaux F, Marc P, Bouchoux C, Delaveau T, Hikkel I, Potier MC, Jacq C. An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor. EMBO Rep. 2(6), pp.493-8 (2001).
Devaux F, Marc P, Jacq C. Transcriptomes, transcription activators and microarrays. FEBS Lett. 498(2-3), pp.140-4 (2001).
Fischer G, Neuveglise C, Durrens P, Gaillardin C, Dujon B. Evolution of gene order in the genomes of two related yeast species. Genome Res. 11(12), pp.2009-19 (2001).
Bassetti B, Cosentino Lagomarsino M, Jona P. A model for the self-organization of microtubules driven by molecular motors. The European Physical Journal B-Condensed Matter and Complex Systems. 15, pp.483–492 (2000).
Carbone A, Gromov M, Prusinkiewicz P. Pattern formation in biology, vision and dynamics. World Scientific Publishing Company. , (2000).
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ. Chromosomal evolution in Saccharomyces. Nature. 405(6785), pp.451-4 (2000).
Falciatore A, Riberà d'Alcalà M, Croot P, Bowler C. Perception of environmental signals by a marine diatom. Science. 288(5475), pp.2363-6 (2000).
IM Rouzine, Coffin JM Interplay Between Experiment and Theory in Development of a Working Model for {HIV}-1 Population Dynamics. in Origin and Evolution of Viruses. Elsevier. pp. 225–262 (1999)
IM Rouzine, Coffin JM. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc Natl Acad Sci U S A. 96(19), pp.10758-63 (1999).
IM Rouzine, Coffin JM. Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus. J Virol. 73(10), pp.8167-78 (1999).
Martin P, Dary A, André A, Fischer G, Leblond P, Decaris B. Intraclonal polymorphism in the bacterium Streptomyces ambofaciens ATCC23877: evidence for a high degree of heterogeneity of the wild type clones. Mutat Res. 430(1), pp.75-85 (1999).
Leblanc C, Falciatore A, Watanabe M, Bowler C. Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms. Plant Mol Biol. 40(6), pp.1031-44 (1999).
Fischer G, Holl AC, Volff JN, Vandewiele D, Decaris B, Leblond P. Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis. Res Microbiol. 149(3), pp.203-10 (1998).

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