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Publications

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.
Filling annotation gaps in yeast genomes using genome-wide contact maps.
Bioinformatics. 30(15), pp.2105-13 (2014).
Merhej J, Frigo A, Le Crom S, Camadro J-M, Devaux F, Lelandais G.
bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.
Yeast. 31, pp.375–391 (2014).
Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès J-C, Collin C, Lasne F, Benusiglio PR, de Paillerets BBressac-, Feunteun J, Lazar V, Gimenez-Roqueplo A-P, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B.
Genetic Evidence of a Precisely Tuned Dysregulation in the Hypoxia Signaling Pathway during Oncogenesis.
Cancer Res. 74(22), pp.6554-64 (2014).
Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H.
Fiona: a parallel and automatic strategy for read error correction.
Bioinformatics. 30(17), pp.i356-63 (2014).
Osella M, Nugent E, Cosentino Lagomarsino M.
Concerted control of Escherichia coli cell division.
Proc Natl Acad Sci U S A. 111(9), pp.3431-5 (2014).
Gomes PDa Silva F, Panel N, Laine E, Pascutti PGelado, Solary E, Tchertanov L.
Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication.
PLOS ONE. 9(5), (2014).
Carbone A
Extracting Coevolving Characters from a Tree of Species.
in Discrete and Topological Models in Molecular Biology. Springer Berlin Heidelberg. pp. 45-65 (2014)
Mathelier A, Carbone A.
Predicted human structural clusters of miRNAs target cancer genes.
Atlas Genet Cytogenet Oncol Haematol. (2014).
Raible F, Falciatore A.
It's about time: rhythms as a new dimension of molecular marine research.
Mar Genomics. 14, pp.1-2 (2014).
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A, Hess WR, Falciatore A.
The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum.
BMC Genomics. 15, pp.698 (2014).
Grilli J, Romano M, Bassetti F, Cosentino Lagomarsino M.
Cross-species gene-family fluctuations reveal the dynamics of horizontal transfers.
Nucleic Acids Res. 42(11), pp.6850-60 (2014).
Bowler C, Falciatore A.
The molecular life of diatoms.
Mar Genomics. (2014).
Louvel H, Gillet-Markowska A, Liti G, Fischer G.
A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes.
Yeast. 31(3), pp.91-101 (2014).
Javer A, Kuwada NJ, Long Z, Benza VG, Dorfman KD, Wiggins PA, Cicuta P, Cosentino Lagomarsino M.
Persistent super-diffusive motion of Escherichia coli chromosomal loci.
Nat Commun. 5, pp.3854 (2014).
de Beauchêne IChauvot, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L.
Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity.
PLoS Comput Biol. 10(7), pp.e1003749 (2014).

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