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Publications

Batorsky R, Sergeev RA, IM Rouzine. The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations. PLoS Comput Biol. 10(10), pp.e1003878 (2014).
Zhu S, Riou M, C Yao A, Carvalho S, Rodriguez PC, Bensaude O, Paoletti P, Ye-Lehmann S. Genetically encoding a light switch in an ionotropic glutamate receptor reveals subunit-specific interfaces. Proc Natl Acad Sci U S A. 111(16), pp.6081-6 (2014).
Wang J, Ye-Lehmann S, Gautheret D, Lehmann J. Development of a new method to identify aminoacylated RNA. BIO Web of Conferences. 2, pp.05003 (2014).
Müller P, Bouly J-P, Hitomi K, Balland V, Getzoff ED, Ritz T, Brettel K. ATP Binding Turns Plant Cryptochrome Into an Efficient Natural Photoswitch. Scientific Reports. 4, pp.5175 - (2014).
Kennard AS, Osella M, Javer A, Grilli J, Nghe P, Tans S, Cicuta P, Cosentino Lagomarsino M. Individuality and universality in the growth-division laws of single E. coli cells. (2014).
Srinivasan R, Scolari VF, Cosentino Lagomarsino M, Seshasayee ASai Narain. The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli. Nucleic Acids Research. (2014).
Baldassi C, Zamparo M, Feinauer C, Procaccini A, Zecchina R, Weigt M, Pagnani A. Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners. Hamacher K (Eds.). PLoS ONE. 9, pp.e92721 (2014).
Iacovelli F, Alves C, Falconi M, Oteri F, de Oliveira CLP, Desideri A. Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family. Walter NG (Eds.). Biopolymers. 101, pp.992–999 (2014).
Morcos F, Hwa T, Onuchic JN, Weigt M Direct Coupling Analysis for Protein Contact Prediction. in Methods in Molecular Biology, Protein Structure Prediction. 1137, Springer New York. pp. 55-70 (2014)
Dhamgaye S, Devaux F, Vandeputte P, Khandelwal NKumar, Sanglard D, Mukhopadhyay G, Prasad R. Molecular mechanisms of action of herbal antifungal alkaloid berberine, in Candida albicans. PLoS One. 9(8), pp.e104554 (2014).
Drillon G, Carbone A, Fischer G. SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes. PLoS One. 9(3), pp.e92621 (2014).
Champeimont R, Carbone A. SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis. BMC Bioinformatics. 15, pp.391 (2014).
Long Z, Olliver A, Brambilla E, Sclavi B, Cosentino Lagomarsino M, Dorfman KD. Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy. Analyst. 139, pp.5254-5262 (2014).
Mandrà S, Cosentino Lagomarsino M, Gherardi M. Soft bounds on diffusion produce skewed distributions and Gompertz growth. Phys. Rev. E. 90, pp.032805 (2014).

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