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Publications

Zaffagnini M, De Mia M, Morisse S, Di Giacinto N, Marchand CH, Maes A, Lemaire SD, Trost P. Protein S-nitrosylation in photosynthetic organisms: A comprehensive overview with future perspectives. Biochim Biophys Acta. 1864, pp.952-66 (2016).
Gütle DD, Roret T, Muller SJ, Couturier J, Lemaire SD, Hecker A, Dhalleine T, Buchanan BB, Reski R, Einsle O, Jacquot JP. Chloroplast FBPase and SBPase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories. Proc Natl Acad Sci U S A. 113, pp.6779-84 (2016).
Perez-Perez ME, Lemaire SD, Crespo JL. Control of Autophagy in Chlamydomonas Is Mediated through Redox-Dependent Inactivation of the ATG4 Protease. Plant Physiol. 172, pp.2219-2234 (2016).
Berger H, De Mia M, Morisse S, Marchand CH, Lemaire SD, Wobbe L, Kruse O. A Light Switch Based on Protein S-Nitrosylation Fine-Tunes Photosynthetic Light Harvesting in Chlamydomonas. Plant Physiol. 171, pp.821-32 (2016).
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS. Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. 10(11), pp.2557-2568 (2016).
Rast LI, IM Rouzine, Rozhnova G, Bishop L, Weinberger AD, Weinberger LS. Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals. PLoS Comput Biol. 12(5), pp.e1004799 (2016).
Xiao Y, IM Rouzine, Bianco S, Acevedo A, Goldstein EFaul, Farkov M, Brodsky L, Andino R. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host Microbe. 19(4), pp.493-503 (2016).
Tian M, Ye-Lehmann S. Allosteric regulation in NMDA receptors revealed by the genetically encoded photo-cross-linkers. Scientific Reports. 6, pp.34751 (2016).
Chen Y, Lu W, Gao N, Long Y, Shao Y, Liu M, Chen H, Ye S, Ma X, Liu M, Li D. Generation of obese rat model by transcription activator-like effector nucleases targeting the leptin receptor gene. Sci China Life Sci. (2016).
Chen Y, Ma J, Lu W, Tian M, Thauvin M, Yuan C, Volovitch M, Wang Q, Holst J, Liu M, Vriz S, Ye-Lehmann S, Wang L, Li D. Heritable expansion of the genetic code in mouse and zebrafish. Cell Res. (2016).
Barrat-Charlaix P, Figliuzzi M, Weigt M. Improving landscape inference by integrating heterogeneous data in the inverse Ising problem. Sci. Rep. 6, 37812, (2016).
Coucke A, Uguzzoni G, Oteri F, Cocco S, Monasson R, Weigt M. Direct coevolutionary couplings reflect biophysical residue interactions in proteins. The Journal of Chemical Physics. 145, pp.174102-17 (2016).
Delaveau T, Davoine D, Jolly A, Vallot A, Rouviere JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M. Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae. Nucleic Acids Res. 44(18), pp.8826-8841 (2016).
Ripoche H, Laine E, Ceres N, Carbone A*. JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures. Nucleic Acids Research. (2016).
Gueudré T, Baldassi C, Zamparo M, Weigt M, Pagnani A. Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis. Proc. Natl. Acad. Sci. 113(43), pp.12186-12191 (2016).

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