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Publications

Teppa E, Nadalin F, Combet C, Zea D, David L, Carbone A.
Coevolution analysis of amino-acids reveals diversified drug resistance solutions in viral sequences: a case study of hepatitis B virus.
Virus Evolution. (In Press).
Corsi F, Lavery R, Laine E, Carbone A.
Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties.
PLoS Computational Biology. (In Press).
Boto R, Peccati F, Laplaza R, Quan C, Carbone A, Piquemal J-P, Maday Y, Contreras-García J.
NCIPLOT4: A New Step Towards a Fast Quantification of Noncovalent Interactions.
WIREs Computational Molecular Science. (In Press).
Perthame B, Salort D.
Derivation of a voltage density equation from a voltage-conductance kinetic model for networks of Integrate-and-Fire neurons.
Communication in Mathematical sciences. (In Press).
Nguyen TN, Clairambault J, Jaffredo T, Perthame B, Salort D.
Adaptive dynamics of hematopoietic stem cells and their supporting stroma: A model and mathematical analysis.
Mathematical Biosciences and Engineering. (In Press).
Cáceres MJ, Roux P, Salort D, Schneider R.
Global-in-time classical solutions and qualitative properties for the NNLIF neuron model with synaptic delay.
Communication in Partial Differential Equations. (In Press).
Tian M, Wang Q, Ye-Lehmann S
Elucidating GPCR structural function relationship through genetic code expansion.
in Topics in Medicinal Chemistry. Edited by: Granier S. and Lebon G. Springer. (In Press)
O'Donnell S, Fischer G.
MUM&Co: Accurate detection of all SV types through whole genome alignment.
Bioinformatics (Oxford, England). pp.btaa115 (2020).
Yousuf M, Iuliani I, Veetil RT, Seshasayee A S N, Sclavi B, Cosentino Lagomarsino M.
Early fate of exogenous promoters in E. coli.
Nucleic Acids Research. (2020).
Gueudré T, Baldassi C, Pagnani A, Weigt M
Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching.
in Protein-Protein Interaction Networks. Methods in Molecular Biology,. Edited by: Canzar S., Ringeling F. 2074, New York, NY. Humana. (2020)
Reimer JM, Eivaskhani M, Harb I, Guarné A, Weigt M, T. Schmeing M.
Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science. 366, (2019).
Rodriguez-Horta E, Barrat-Charlaix P, Weigt M.
Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data.
Entropy. 21, pp.1090 (2019).
Croce G, Gueudré T, Cuevas MVirginia R, Keidel V, Figliuzzi M, Szurmant H, Weigt M.
A multi-scale coevolutionary approach to predict interactions between protein domains.
PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1006891 - (2019).
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu R-R, Xu X-M, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang S-Y, Rosell M, Rodríguez-Lumbreras LAngel, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin W-H, Aderinwale T, Subraman SRaghavendr, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, de Beauchêne IChauvot, Maigret B, Devignes M-D, Echartea MElisa Ruiz, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, DapkŪnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, et al..
Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment.
Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and BioinformaticsProteins. (ja), (2019).
Marmier G, Weigt M, Bitbol A-F.
Phylogenetic correlations can suffice to infer protein partners from sequences.
PLOS Computational BiologyPLOS Computational Biology. 15(10), pp.e1007179 - (2019).

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