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Publications

Si Y, Grazon C, Clavier G, Rieger J, Audibert J-F, Sclavi B, Méallet-Renault R.
Rapid and accurate detection of Escherichia coli growth by fluorescent pH-sensitive organic nanoparticles for high-throughput screening applications.
Biosens Bioelectron. 75, pp.320-7 (2016).
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
ISME J. 10(11), pp.2557-2568 (2016).
Xiao Y, IM Rouzine, Bianco S, Acevedo A, Goldstein EFaul, Farkov M, Brodsky L, Andino R.
RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.
Cell Host Microbe. 19(4), pp.493-503 (2016).
Rast LI, IM Rouzine, Rozhnova G, Bishop L, Weinberger AD, Weinberger LS.
Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals.
PLoS Comput Biol. 12(5), pp.e1004799 (2016).
Tian M, Ye-Lehmann S.
Allosteric regulation in NMDA receptors revealed by the genetically encoded photo-cross-linkers.
Scientific Reports. 6, pp.34751 (2016).
Chen Y, Ma J, Lu W, Tian M, Thauvin M, Yuan C, Volovitch M, Wang Q, Holst J, Liu M, Vriz S, Ye-Lehmann S, Wang L, Li D.
Heritable expansion of the genetic code in mouse and zebrafish.
Cell Res. (2016).
Chen Y, Lu W, Gao N, Long Y, Shao Y, Liu M, Chen H, Ye S, Ma X, Liu M, Li D.
Generation of obese rat model by transcription activator-like effector nucleases targeting the leptin receptor gene.
Sci China Life Sci. (2016).
Barrat-Charlaix P, Figliuzzi M, Weigt M.
Improving landscape inference by integrating heterogeneous data in the inverse Ising problem.
Sci. Rep. 6, 37812, (2016).
Coucke A, Uguzzoni G, Oteri F, Cocco S, Monasson R, Weigt M.
Direct coevolutionary couplings reflect biophysical residue interactions in proteins.
The Journal of Chemical Physics. 145, pp.174102-17 (2016).
Delaveau T, Davoine D, Jolly A, Vallot A, Rouviere JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M.
Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.
Nucleic Acids Res. 44(18), pp.8826-8841 (2016).
Ripoche H, Laine E, Ceres N, Carbone A.
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.
Nucleic Acids Research. (2016).
Hannezo E, Coucke A, Joanny J-F.
Interplay of migratory and division forces as a generic mechanism for stem cell patterns.
Phys. Rev. E. 93, pp.022405 (2016).
Gueudré T, Baldassi C, Zamparo M, Weigt M, Pagnani A.
Simultaneous identification of specifically interacting paralogs and inter-protein contacts by Direct-Coupling Analysis.
Proc. Natl. Acad. Sci. 113(43), pp.12186-12191 (2016).
Simonson T, Ye-Lehmann S, Palmai Z, Amara N, Wydau-Dematteis S, Bigan E, Druart K, Moch C, Plateau P.
Redesigning the stereospecificity of tyrosyl-tRNA synthetase.
Proteins. 84(2), pp.240-53 (2016).
MetaSUB International Consortium, Lafontaine I, Richard H.
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report.
Microbiome. 4(1), pp.24 (2016).

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