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Publications

Cosentino Lagomarsino M, Jona P, Bassetti B, Isambert H. Hierarchy and feedback in the evolution of the Escherichia coli transcription network. Proc Natl Acad Sci U S A. 104(13), pp.5516-20 (2007).
IM Rouzine, Sergeev RA, Glushtsov AI. Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus. Proc Natl Acad Sci U S A. 103(3), pp.666-71 (2006).
Sacquin-Mora S, Lavery R, Trojan LA, Carbone A Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels. in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)
Cosentino Lagomarsino M, Jona P, Bassetti B Randomization and feedback properties of directed graphs inspired by gene networks. in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)
Fischer G, Rocha EPC, Brunet F, Vergassola M, Dujon B. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet. 2(3), pp.e32 (2006).
Koszul R, Dujon B, Fischer G. Stability of large segmental duplications in the yeast genome. Genetics. 172(4), pp.2211-22 (2006).
Houalla R, Devaux F, Fatica A, Kufel J, Barrass D, Torchet C, Tollervey D. Microarray detection of novel nuclear RNA substrates for the exosome. Yeast. 23(6), pp.439-54 (2006).
Carbone A. Computational prediction of genomic functional cores specific to different microbes. J Mol Evol. 63(6), pp.733-46 (2006).
IM Rouzine, Coffin JM. Evolution of HIV Under Selection and Weak Recombination. Genetics. (2005).
IM Rouzine, Coffin JM. Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination. Genetics. 170(1), pp.7 - 18 (2005).
Ye S, Discher BM, Strzalka J, Xu T, Wu SP, Noy D, Kuzmenko I, Gog T, Therien MJ, P Dutton L, J Blasie K. Amphiphilic four-helix bundle peptides designed for light-induced electron transfer across a soft interface. Nano Lett. 5(9), pp.1658-67 (2005).
Discher BM, Noy D, Strzalka J, Ye S, Moser CC, Lear JD, J Blasie K, P Dutton L. Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions. Biochemistry. 44(37), pp.12329-43 (2005).
Carbone A. Pathways of deduction. Geometries of nature, living systems, human cognition - New Interactions of Mathematics with Natural Sciences and Humanities. (2005).
Carbone A, Pierce N (Eds.)DNA Computing. Proceedings of the 11th International Workshop on DNA Computing - DNA11. London (ON, Canada). LNCS 3892, Springer. (2005).
Miele V, Bourguignon P-Y, Robelin D, Nuel G, Richard H. seq++: analyzing biological sequences with a range of Markov-related models. Bioinformatics. 21, pp.2783-2784 (2005).

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