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Publications

Chen Y, Lu L, Ye S.
Genetic Code Expansion and Optoproteomics.
Yale J Biol Med. 90(4), pp.599-610 (2017).
Tian M, Ye S.
Design of Light-Sensitive NMDARs by Genetically Encoded Photo-Cross-Linkers.
Methods Mol Biol. 1677, pp.185-197 (2017).
Doumic M, Perthame B, Ribes E, Salort D, Toubiana N.
Toward an integrated workforce planning framework using structured equations.
European Journal of Operational Research. 262, pp.217 - 230 (2017).
Perthame B, Salort D, Wainrib G.
Distributed synaptic weights in a LIF neural network and learning rules.
Physica D: Nonlinear Phenomena. 353, (2017).
Barrat-Charlaix P, Weigt M.
De la variabilité des séquences à la prédiction structurale et fonctionnelle : modélisation de familles de protéines homologues.
Biologie Aujourd’hui. 211(3), pp.239-244 (2017).
Villanova V, Fortunato AE, Singh D, Dal Bo D, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier A, Poolman M, Curien G, Petroutsos D, Finazzi G.
Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum.
Philos Trans R Soc Lond B Biol Sci. 372(1728), (2017).
Moejes FWanjiku, Matuszynska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GRocco, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O.
A systems-wide understanding of photosynthetic acclimation in algae and higher plants.
J Exp Bot. 68(11), pp.2667-2681 (2017).
Kirkham AR, Richthammer P, Schmidt K, Wustmann M, Maeda Y, Hedrich R, Brunner E, Tanaka T, van Pée K-H, Falciatore A, Mock T.
A role for the cell-wall protein silacidin in cell size of the diatom Thalassiosira pseudonana.
ISME J. 11(11), pp.2452-2464 (2017).
Krakau S, Richard H, Marsico A.
PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data.
Genome Biology. 18(1), (2017).
Cocco S, Feinauer C, Figliuzzi M, Monasson R, Weigt M.
Inverse Statistical Physics of Protein Sequences: A Key Issues Review.
Rep. Prog. Phys. (2017).
Szurmant H, Weigt M.
Inter-residue, inter-protein and inter-family coevolution: bridging the scales.
Curr Opin Struct Biol. 50, pp.26-32 (2017).
Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O.
Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria.
Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017).
Dequeker C, Laine E, Carbone A.
INTerface Builder: a fast protein-protein interface reconstruction tool.
J Chem Inf Model. (2017).
Lidsky PV, Andino R, IM Rouzine.
Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.
Curr Opin Virol. 23, pp.120-124 (2017).
Nadalin F, Carbone A.
Protein-protein interaction specificity is captured by contact preferences and interface composition.
Bioinformatics. (2017).

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