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Publications

Villanova V, Fortunato AE, Singh D, Dal Bo D, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier A, Poolman M, Curien G, Petroutsos D, Finazzi G.
Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum.
Philos Trans R Soc Lond B Biol Sci. 372(1728), (2017).
Moejes FWanjiku, Matuszynska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GRocco, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O.
A systems-wide understanding of photosynthetic acclimation in algae and higher plants.
J Exp Bot. 68(11), pp.2667-2681 (2017).
Krakau S, Richard H, Marsico A.
PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data.
Genome Biology. 18(1), (2017).
Cocco S, Feinauer C, Figliuzzi M, Monasson R, Weigt M.
Inverse Statistical Physics of Protein Sequences: A Key Issues Review.
Rep. Prog. Phys. (2017).
Szurmant H, Weigt M.
Inter-residue, inter-protein and inter-family coevolution: bridging the scales.
Curr Opin Struct Biol. 50, pp.26-32 (2017).
Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O.
Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria.
Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017).
Dequeker C, Laine E, Carbone A.
INTerface Builder: a fast protein-protein interface reconstruction tool.
J Chem Inf Model. (2017).
Lidsky PV, Andino R, IM Rouzine.
Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.
Curr Opin Virol. 23, pp.120-124 (2017).
Nadalin F, Carbone A.
Protein-protein interaction specificity is captured by contact preferences and interface composition.
Bioinformatics. (2017).
Nayeem SM, Oteri F, Baaden M, Deep S.
Residues of Alpha Helix H3 Determine Distinctive Features of Transforming Growth Factor β3.
The Journal of Physical Chemistry B. 121, pp.5483-5498 (2017).
De Lazzari E, Grilli J, Maslov S, Cosentino Lagomarsino M.
Family-specific scaling laws in bacterial genomes.
Nucleic Acid Research. (2017).
Klippenstein V, Hoppmann C, Ye-Lehmann S, Wang L, Paoletti P.
Optocontrol of glutamate receptor activity by single side-chain photoisomerization.
Elife. 6, (2017).
Bernardes JS, Vaquero C, Carbone A.
Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes.
Malar J. 16(1), (2017).
Jaubert M, Bouly J-P, d'Alcalà MRibera, Falciatore A.
Light sensing and responses in marine microalgae.
Curr Opin Plant Biol. 37, pp.70-77 (2017).
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, E Armbrust V, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Nature. 541(7638), pp.536-540 (2017).

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