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Publications

de Beauchêne IChauvot, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L.
Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity.
PLoS Comput Biol. 10(7), pp.e1003749 (2014).
Mirauta B, Nicolas P, Richard H.
Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models.
Bioinformatics. 30(10), pp.1409-16 (2014).
Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A.
The Cryptochrome/Photolyase Family in aquatic organisms.
Mar Genomics. 14, pp.23-37 (2014).
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S.
Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae.
PLoS One. 9(11), pp.e111589 (2014).
Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, J Martin A, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJin, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CYL, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WChan, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WRose, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, Chandrasegaran S.
Total synthesis of a functional designer eukaryotic chromosome.
Science. 344(6179), pp.55-8 (2014).
Daboussi F, Leduc S, Maréchal A, Dubois G, Guyot V, Perez-Michaut C, Amato A, Falciatore A, Juillerat A, Beurdeley M, Voytas DF, Cavarec L, Duchateau P.
Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology.
Nat Commun. 5, pp.3831 (2014).
Thacker VV, Bromek K, Meijer B, Kotar J, Sclavi B, Cosentino Lagomarsino M, Keyser UF, Cicuta P.
Bacterial nucleoid structure probed by active drag and resistive pulse sensing.
Integr Biol (Camb). 6(2), pp.184-91 (2014).
Raible F, Falciatore A.
It's about time: rhythms as a new dimension of molecular marine research.
Mar Genomics. 14, pp.1-2 (2014).
Rogato A, Richard H, Sarazin A, Voss B, Cheminant Navarro S, Champeimont R, Navarro L, Carbone A, Hess WR, Falciatore A.
The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum.
BMC Genomics. 15, pp.698 (2014).
Le Bihan Y-V, Matot B, Pietrement O, Giraud-Panis M-J, Gasparini S, Le Cam E, Gilson E, Sclavi B, Miron S, Le Du M-H.
Effect of Rap1 binding on DNA distortion and potassium permanganate hypersensitivity.
Acta Crystallogr D Biol Crystallogr. 69(Pt 3), pp.409-19 (2013).
Saggioro C, Olliver A, Sclavi B.
Temperature-dependence of the DnaA-DNA interaction and its effect on the autoregulation of dnaA expression.
Biochem J. 449(2), pp.333-41 (2013).
Xu Z, Duc KDao, Holcman D, Teixeira MTeresa.
The length of the shortest telomere as the major determinant of the onset of replicative senescence.
Genetics. 194(4), pp.847-57 (2013).
IM Rouzine, Weinberger LS.
Reply to “Coadaptive Stability of Interfering Particles with HIV-1 When There Is an Evolutionary Conflict”.
Journal of virology. 87, pp.9960–9962 (2013).
IM Rouzine, Weinberger LS.
The quantitative theory of within-host viral evolution.
Journal of Statistical Mechanics: Theory and Experiment. 2013, pp.P01009 (2013).
IM Rouzine, Weinberger LS.
Design requirements for interfering particles to maintain coadaptive stability with HIV-1.
J Virol. 87(4), pp.2081-93 (2013).

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