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Publications

Jezequel N, Cosentino Lagomarsino M, Heslot F, Thomen P.
Long-Term Diversity and Genome Adaptation of Acinetobacter baylyi in a Minimal-Medium Chemostat.
Genome Biology and Evolution. 5, pp.87-97 (2013).
Laine E, Carbone A
Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking.
in IEEE International Conference on Image Analysis and Processing (ICIAP) 2013 Workshops, LNCS 8158. Springer. pp. 318–325 (2013)
Mirauta B, Nicolas P, Richard H
Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments.
in IEEE International Conference on Image Analysis and Processing (ICIAP) 2013 Workshops, LNCS 8158. Springer. pp. 418–427 (2013)
Cocco S, Monasson R, Weigt M
Inference of Hopfield-Potts patterns from covariation in protein families: calculation and statistical error bars.
in Journal of Physics: Conference Series. 473, IOP Publishing. p. 012010 (2013)
Szurmant H, Weigt M
Genetic covariance.
in Brenner's Encyclopedia of Genetics, 2nd edition. (2013)
Drillon G, Carbone A, Fischer G.
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs.
Journal of Logic and Computation. 23, pp.815–838 (2013).
Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, Sander C.
Perturbation biology: inferring signaling networks in cellular systems.
PLoS Comput Biol. 9(12), pp.e1003290 (2013).
Long Z, Nugent E, Javer A, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.
Microfluidic chemostat for measuring single cell dynamics in bacteria.
Lab Chip. 13(5), pp.947-54 (2013).
Srinivasan R, Chandraprakash D, Krishnamurthi R, Singh P, Scolari VF, Krishna S, Seshasayee ASai Narain.
Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12.
Mol Biosyst. 9(8), pp.2021-33 (2013).
Ekeberg M, Lövkvist C, Lan Y, Weigt M, Aurell E.
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models.
Phys Rev E Stat Nonlin Soft Matter Phys. 87(1), pp.012707 (2013).
Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D.
High-frequency promoter firing links THO complex function to heavy chromatin formation.
Cell Rep. 5(4), pp.1082-94 (2013).
Osella M, Cosentino Lagomarsino M.
Growth-rate-dependent dynamics of a bacterial genetic oscillator.
Phys Rev E Stat Nonlin Soft Matter Phys. 87(1), pp.012726 (2013).
Cocco S, Monasson R, Weigt M.
From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction.
PLoS Comput Biol. 9(8), pp.e1003176 (2013).
Agier N, Romano OMaria, Touzain F, Cosentino Lagomarsino M, Fischer G.
The spatiotemporal program of replication in the genome of Lachancea kluyveri.
Genome Biol Evol. 5(2), pp.370-88 (2013).
Gherardi M, Mandrà S, Bassetti B, Cosentino Lagomarsino M.
Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.
Proc Natl Acad Sci U S A. 110(52), pp.21054-8 (2013).

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