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Publications

Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, Sander C.
Perturbation biology: inferring signaling networks in cellular systems.
PLoS Comput Biol. 9(12), pp.e1003290 (2013).
Long Z, Nugent E, Javer A, Cicuta P, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.
Microfluidic chemostat for measuring single cell dynamics in bacteria.
Lab Chip. 13(5), pp.947-54 (2013).
Srinivasan R, Chandraprakash D, Krishnamurthi R, Singh P, Scolari VF, Krishna S, Seshasayee ASai Narain.
Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12.
Mol Biosyst. 9(8), pp.2021-33 (2013).
Ekeberg M, Lövkvist C, Lan Y, Weigt M, Aurell E.
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models.
Phys Rev E Stat Nonlin Soft Matter Phys. 87(1), pp.012707 (2013).
Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D.
High-frequency promoter firing links THO complex function to heavy chromatin formation.
Cell Rep. 5(4), pp.1082-94 (2013).
Osella M, Cosentino Lagomarsino M.
Growth-rate-dependent dynamics of a bacterial genetic oscillator.
Phys Rev E Stat Nonlin Soft Matter Phys. 87(1), pp.012726 (2013).
Cocco S, Monasson R, Weigt M.
From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction.
PLoS Comput Biol. 9(8), pp.e1003176 (2013).
Agier N, Romano OMaria, Touzain F, Cosentino Lagomarsino M, Fischer G.
The spatiotemporal program of replication in the genome of Lachancea kluyveri.
Genome Biol Evol. 5(2), pp.370-88 (2013).
Gherardi M, Mandrà S, Bassetti B, Cosentino Lagomarsino M.
Evidence for soft bounds in Ubuntu package sizes and mammalian body masses.
Proc Natl Acad Sci U S A. 110(52), pp.21054-8 (2013).
Zarei M, Sclavi B, Cosentino Lagomarsino M.
Gene silencing and large-scale domain structure of the E. coli genome.
Mol Biosyst. 9(4), pp.758-67 (2013).
Javer A, Long Z, Nugent E, Grisi M, Siriwatwetchakul K, Dorfman KD, Cicuta P, Cosentino Lagomarsino M.
Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization.
Nat Commun. 4, pp.3003 (2013).
Bedhomme M, Adamo M, Marchand CH, Couturier J, Rouhier N, Lemaire SD, Zaffagnini M, Trost P
Glutathionylation of cytosolic glyceraldehyde-3-phosphate dehydrogenase from the model plant Arabidopsis thaliana is reversed by both glutaredoxins and thioredoxins in vitro.
(2012)
Zaffagnini M, Bedhomme M, Marchand CH, Morisse S, Trost P, Lemaire SD.
Redox regulation in photosynthetic organisms: focus on glutathionylation.
Antioxid Redox Signal. 16, pp.567-86 (2012).
Perez-Perez ME, Lemaire SD, Crespo JL.
Reactive oxygen species and autophagy in plants and algae.
Plant Physiol. 160, pp.156-64 (2012).
Zaffagnini M, Bedhomme M, Groni H, Marchand CH, Puppo C, Gontero B, Cassier-Chauvat C, Decottignies P, Lemaire SD.
Glutathionylation in the photosynthetic model organism Chlamydomonas reinhardtii: a proteomic survey.
Mol Cell Proteomics. 11, pp.M111 014142 (2012).

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