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Publications

Procaccini A, Lunt B, Szurmant H, Hwa T, Weigt M.
Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks.
Rattray M (Eds.). PLoS One. 6, pp.e19729 (2011).
Goudot C, Etchebest C, Devaux F, Lelandais G.
The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.
PLoS One. 6(6), pp.e20924 (2011).
Drillon G, Fischer G.
Comparative study on synteny between yeasts and vertebrates.
C R Biol. 334(8-9), pp.629-38 (2011).
Pakdaman K, Perthame B, Salort D.
Relaxation and self-sustained oscillations in the time elapsed neuron network model.
ArXiv e-prints. (2011).
Mäder U, Nicolas P, Richard H, Bessières P, Aymerich S.
Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods.
Curr Opin Biotechnol. 22(1), pp.32-41 (2011).
Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M.
Direct-coupling analysis of residue coevolution captures native contacts across many protein families.
Proceedings of the National Academy of Sciences. 108, pp.E1293-E1301 (2011).
Bruot N, Damet L, Kotar J, Cicuta P, Cosentino Lagomarsino M.
Noise and synchronization of a single active colloid.
Phys Rev Lett. 107(9), pp.094101 (2011).
Grant MAA, Saggioro C, Ferrari U, Bassetti B, Sclavi B, Cosentino Lagomarsino M.
DnaA and the timing of chromosome replication in Escherichia coli as a function of growth rate.
BMC Syst Biol. 5, pp.201 (2011).
Bernardes JS, Carbone A, Zaverucha G.
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.
BMC Bioinformatics. 12, pp.83 (2011).
Scolari VF, Bassetti B, Sclavi B, Cosentino Lagomarsino M.
Gene clusters reflecting macrodomain structure respond to nucleoid perturbations.
Mol Biosyst. 7(3), pp.878-88 (2011).
Lelandais G, Goudot C, Devaux F.
The evolution of gene expression regulatory networks in yeasts.
C R Biol. 334(8-9), pp.655-61 (2011).
Olliver A, Saggioro C, Herrick J, Sclavi B.
DnaA-ATP acts as a molecular switch to control levels of ribonucleotide reductase expression in Escherichia coli.
Mol Microbiol. 76(6), pp.1555-71 (2010).
Adrover M, Pauwels K, Prigent S, de Chiara C, Xu Z, Chapuis C, Pastore A, Rezaei H.
Prion fibrillization is mediated by a native structural element that comprises helices H2 and H3.
J Biol Chem. 285(27), pp.21004-12 (2010).
Ye S, Berger AAnn, Petzold D, Reimann O, Matt B, Koksch B.
Chemical aminoacylation of tRNAs with fluorinated amino acids for in vitro protein mutagenesis.
O’Hagan D (Eds.). Beilstein Journal of Organic Chemistry. 6, pp.40 (2010).
IM Rouzine, Coffin JM.
Multi-site adaptation in the presence of infrequent recombination.
Theoretical population biology. 77, pp.189–204 (2010).

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