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Publications

Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M.
Feedback topology and XOR-dynamics in Boolean networks with varying input structure.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Hu H, Wrogemann K, Kalscheuer V, Tzschach A, Richard H, Haas SA, Menzel C, Bienek M, Froyen G, Raynaud M, Van Bokhoven H, Chelly J, Ropers H, Chen W.
Erratum to: Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing.
Hugo J. 3(1-4), pp.83 (2009).
De Riso V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A.
Gene silencing in the marine diatom Phaeodactylum tricornutum.
Nucleic Acids Res. 37(14), pp.e96 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C.
Unusual composition of a yeast chromosome arm is associated with its delayed replication.
Genome Res. 19(10), pp.1710-21 (2009).
Cosentino Lagomarsino M, Bassetti B, Castellani G, Remondini D.
Functional models for large-scale gene regulation networks: realism and fiction.
Mol Biosyst. 5(4), pp.335-44 (2009).
Baussand J, Carbone A.
A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.
PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H.
High-resolution protein complexes from integrating genomic information with molecular simulation.
Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
Souciet J-L, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val M-E, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret M-L, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, De Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard G-F, Sacerdot C, Straub M-L, Talla E.
Comparative genomics of protoploid Saccharomycetaceae.
Genome Res. 19(10), pp.1696-709 (2009).
Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B.
Universal features in the genome-level evolution of protein domains.
Genome Biol. 10(1), pp.R12 (2009).
Váchová L, Kučerová H, Devaux F, lehlová MÚ, Palková Z.
Metabolic diversification of cells during the development of yeast colonies.
Environ Microbiol. 11(2), pp.494-504 (2009).
Weigt M, White RA, Szurmant H, Hoch JA, Hwa T.
Identification of direct residue contacts in protein-protein interaction by message passing.
Proc Natl Acad Sci U S A. 106(1), pp.67-72 (2009).
Bailey AG, Lowe CP, Pagonabarraga I, Cosentino Lagomarsino M.
Accurate simulation dynamics of microscopic filaments using "caterpillar" Oseen hydrodynamics.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(4 Pt 2), pp.046707 (2009).
Bernardes JS, Fernandez JH, Vasconcelos ATereza R.
Structural descriptor database: a new tool for sequence-based functional site prediction.
BMC Bioinformatics. 9, pp.492 (2008).
Costa J, Bernardes JS, Santos V, Zaverucha G
Remote Homology Detection Through Discriminative Statistical Relational Learning.
in The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. (2008)
Sclavi B.
Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions.
Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).

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