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Publications

Menezes RAndrade, Pimentel C, Silva ARita Coure, Amaral C, Merhej J, Devaux F, Rodrigues-Pousada C. Mediator, SWI/SNF and SAGA complexes regulate Yap8-dependent transcriptional activation of ACR2 in response to arsenate. Biochim Biophys Acta. 1860(4), pp.472-481 (2017).
Tian M, Ye S. Design of Light-Sensitive NMDARs by Genetically Encoded Photo-Cross-Linkers. Methods Mol Biol. 1677, pp.185-197 (2017).
Chen Y, Lu L, Ye S. Genetic Code Expansion and Optoproteomics. Yale J Biol Med. 90(4), pp.599-610 (2017).
Perthame B, Salort D, Wainrib G. Distributed synaptic weights in a LIF neural network and learning rules. Physica D: Nonlinear Phenomena. 353, (2017).
Doumic M, Perthame B, Ribes E, Salort D, Toubiana N. Toward an integrated workforce planning framework using structured equations. European Journal of Operational Research. 262, pp.217 - 230 (2017).
Barrat-Charlaix P, Weigt M. De la variabilité des séquences à la prédiction structurale et fonctionnelle : modélisation de familles de protéines homologues. Biologie Aujourd’hui. 211(3), pp.239-244 (2017).
Kirkham AR, Richthammer P, Schmidt K, Wustmann M, Maeda Y, Hedrich R, Brunner E, Tanaka T, van Pée K-H, Falciatore A, Mock T. A role for the cell-wall protein silacidin in cell size of the diatom Thalassiosira pseudonana. ISME J. 11(11), pp.2452-2464 (2017).
Villanova V, Fortunato AE, Singh D, Dal Bo D, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier A, Poolman M, Curien G, Petroutsos D, Finazzi G. Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum. Philos Trans R Soc Lond B Biol Sci. 372(1728), (2017).
Moejes FWanjiku, Matuszynska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GRocco, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O. A systems-wide understanding of photosynthetic acclimation in algae and higher plants. J Exp Bot. 68(11), pp.2667-2681 (2017).
Krakau S, Richard H, Marsico A. PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data. Genome Biology. 18(1), (2017).
Cocco S, Feinauer C, Figliuzzi M, Monasson R, Weigt M. Inverse Statistical Physics of Protein Sequences: A Key Issues Review. Rep. Prog. Phys. (2017).
Szurmant H, Weigt M. Inter-residue, inter-protein and inter-family coevolution: bridging the scales. Curr Opin Struct Biol. 50, pp.26-32 (2017).
Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017).
Dequeker C, Laine E, Carbone A*. INTerface Builder: a fast protein-protein interface reconstruction tool. J Chem Inf Model. (2017).
Lidsky PV, Andino R, IM Rouzine. Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections. Curr Opin Virol. 23, pp.120-124 (2017).

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