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Publications

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinformatics. 11, pp.355 (2010).
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. PLoS Comput Biol. 5(1), pp.e1000267 (2009).
Ye S, Huber T, Vogel R, Sakmar TP. FTIR analysis of GPCR activation using azido probes. Nat Chem Biol. 5(6), pp.397 - 399 (2009).
Maury B, Salort D, Vannier C. Trace theorems for trees and application to the human lungs. NHM. pp.469-500 (2009).
Salort D. TRANSPORT EQUATIONS WITH UNBOUNDED FORCE FIELDS AND APPLICATION TO THE VLASOV–POISSON EQUATION. Mathematical Models and Methods in Applied Sciences. 19, pp.199-228 (2009).
Horard B, Eymery A, Fourel G, Vassetzky N, Puechberty J, Roizes G, Lebrigand K, Barbry P, Laugraud A, Gautier C, Ben Simon E, Devaux F, Magdinier F, Vourc'h C, Gilson E. Global analysis of DNA methylation and transcription of human repetitive sequences. Epigenetics. 4(5), pp.339-50 (2009).
Carbone A, Dib L Co-evolution and Information Signals in Biological Sequences. in Theory and Applications of Models of Computation. LNCS 5532, Springer Berlin Heidelberg. pp. 6-17 (2009)
Abbott JJ, Cosentino Lagomarsino M, Zhang L, Dong L, Nelson BJ. How should microrobots swim?. The International Journal of Robotics Research. (2009).
Carbone A, Engelen S Information content of sets of biological sequences revisited. in Algorithmic Bioprocesses. Springer. pp. 31–42 (2009)
Baussand J, Carbone A. A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Fischer G, Thompson D, Wortman JRusso, Fairhead C. Unraveling the genomic diversity of small eukaryotes. Genome Biol. 10(12), pp.318 (2009).
Koszul R, Fischer G. A prominent role for segmental duplications in modeling eukaryotic genomes. C R Biol. 332(2-3), pp.254-66 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C. Unusual composition of a yeast chromosome arm is associated with its delayed replication. Genome Res. 19(10), pp.1710-21 (2009).
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M. Feedback topology and XOR-dynamics in Boolean networks with varying input structure. Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).

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