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Publications

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F. Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata. Genome Biol. 9(11), pp.R164 (2008).
Bernardes JS, Dávila AMR, Costa VS, Zaverucha G. Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinformatics. 8, pp.435 (2007).
Gheorghiu-Svirschevski S, IM Rouzine, Coffin JM. Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model. Mol Biol Evol. 24(2), pp.574-86 (2007).
IM Rouzine, Coffin JM. Highly fit ancestors of a partly sexual haploid population. Theor Popul Biol. 71(2), pp.239-50 (2007).
Baussand J, Carbone A. Metagénomique bactérienne et virale - nouvelles définitions d'espace microbien et nouveaux défis algorithmiques. Technique et Sciences Informatiques, special issue on "Modeling, simulations in postgenomics", Hérmes. (2007).
Cosentino Lagomarsino M, Sellerio A, Isambert H, Bassetti B A large-scale evolutionary approach to the analysis of transcription networks. in SYSBIOHEALTH Symposium. Milano. Locomia Innovazione Publ. . (2007)
Montsant A, Allen AE, Coesel S, De Martino A, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, Davis AK, Thamatrakoln K, Hadi MZ, Lane TW, J. Lippmeier C, Martinez D, Parker MS, Pazour GJ, Saito MA, Rokhsar DS, E. Armbrust V, Bowler C. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. Journal of Phycology. 43, pp.585–604 (2007).
Breton J, Bart-Delabesse E, Biligui S, Carbone A, Seiller X, Okome-Nkoumou M, Nzamba C, Kombila M, Accoceberry I, Thellier M. New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon. Journal of Clinical Microbiology. 45, pp.2580-2589 (2007).
Bassetti F, Cosentino Lagomarsino M, Mandrà S. Exchangeable random networks. Internet Mathematics. 4, pp.357–400 (2007).
Lacoste D, Cosentino Lagomarsino M, Joanny JF. Fluctuations of a driven membrane in an electrolyte. EPL (Europhysics Letters). 77, pp.18006 (2007).
Carbone A Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification. in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007)
Baussand J, Deremble C, Carbone A. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins. Proteins. 67(3), pp.695-708 (2007).
Bassetti F, Cosentino Lagomarsino M, Bassetti B, Jona P. Random networks tossing biased coins. Phys Rev E Stat Nonlin Soft Matter Phys. 75(5 Pt 2), pp.056109 (2007).
Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C. Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes. Mol Biol Cell. 18(2), pp.362-8 (2007).
Cosentino Lagomarsino M, Tanase C, Vos JW, Emons AMie C, Mulder BM, Dogterom M. Microtubule organization in three-dimensional confined geometries: evaluating the role of elasticity through a combined in vitro and modeling approach. Biophys J. 92(3), pp.1046-57 (2007).

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