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Publications

Muller H, Scolari VF, Agier N, le Piazza A, Thierry A, Mercy G, Descorps-Declere S, Lazar-Stefanita L, Espéli O, Llorente B, Fischer G, Mozziconacci J, Koszul R.
Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C.
Mol Syst Biol. 14(7), pp.e8293 (2018).
Ugarte A, Vicedomini R, Bernardes JS, Carbone A.
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
Microbiome. (2018).
Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino Lagomarsino M, Fischer G.
The evolution of the temporal program of genome replication.
Nat Commun. 9(1), pp.2199 (2018).
Taddei L, Chukhutsina V, Lepetit B, Stella GR, Bassi R, van Amerongen H, Bouly J-P, Jaubert M, Finazzi G, Falciatore A.
Dynamic changes between two LHCX-related energy quenching sites control diatom photoacclimation.
Plant Physiology. (2018).
Rouviere JO, Bulfoni M, Tuck A, Cosson B, Devaux F, Palancade B.
A SUMO-dependent feedback loop senses and controls the biogenesis of nuclear pore subunits.
Nat Commun. 9(1), pp.1665 (2018).
Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes JS, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine* E, Lopes* A.
Meet-U: Educating through research immersion.
PLOS Computational Biology. 14, pp.1-10 (2018).
Lagarde N, Carbone A, Sacquin-Mora S.
Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions.
PROTEINS: Structure, Function, and Bioinformatics. (2018).
Raucci R, Laine E, Carbone A.
Local Interaction Signal Analysis predicts protein-protein binding affinity.
Structure. (2018).
Figliuzzi M, Barrat-Charlaix P, Weigt M.
How Pairwise Coevolutionary Models Capture the Collective Residue Variability in Proteins?.
Molecular Biology and Evolution. pp.msy007 (2018).
Douam F, Fusil F, Enguehard M, Dib L, Nadalin F, Schwaller L, Hrebikova G, Mancip J, Mailly L, Montserret R, Ding Q, Maisse C, Carlot E, Xu K, Verhoeyen E, Baumert T, Ploss A, Carbone A*, Cosset FL*, Lavillette D*.
A protein coevolution method designed for conserved sequences uncovers critical features of the original HCV fusion mechanism and provides molecular basis for the design of effective antiviral strategies.
PLoS Pathogens. (2018).
Vakirilis N, Hebert AS, Opulente DA, Achaz G, Hittinger CTodd, Fischer G, Coon JJ, Lafontaine I.
A molecular portrait of de novo genes in yeasts.
Mol Biol Evol. 35(3), pp.631-645 (2018).
Shrestha AMS, Asai K, Frith M, Richard H.
Jointly aligning a group of DNA reads improves accuracy of identifying large deletions.
Nucleic Acids Research. 46(3), (2018).
Tian M, Ye-Lehmann S
Engineering light sensitive NMDARs.
in Methods in Molecular Biology. Edited by: Szepetowski P. and Burnashev N. John Wiley & Sons, Inc. (2018)
Krakau S, Richard H, Marsico A.
PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data.
18(1), pp.240 (2017).
Tian M, Wang Q, Yuan C, Ye S
Structure and Function Studies of GPCRs by Site-Specific Incorporation of Unnatural Amino Aci.
in Topics in Medicinal Chemistry. Springer. Berlin, Heidelberg. Springer,. (2017)

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