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Publications

Cosentino Lagomarsino M, Bassetti B. Systems Biology tra buzzword e realtà. XlaTangente. 8, (2008).
Cosentino Lagomarsino M. Corti circuiti batterici. XlaTangente. 11, (2008).
Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R. Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. Eukaryot Cell. 7(1), pp.68-77 (2008).
Sacquin-Mora S, Carbone A, Lavery R. Identification of Protein Interaction Partners and Protein–Protein Interaction Sites. Journal of Molecular Biology. 382, pp.1276 - 1289 (2008).
Braunstein A, Pagnani A, Weigt M, Zecchina R. Inference algorithms for gene networks: a statistical mechanics analysis. Journal of Statistical Mechanics: Theory and Experiment. 2008, pp.P12001 (2008).
Carbone A, Mathelier A. Environmental and Physiological Insights from Microbial Genome Sequences. Elements of Computational Systems Biology. pp.325–339 (2008).
Del Vescovo V, Casagrande V, Bianchi MM, Piccinni E, Frontali L, Militti C, Fardeau V, Devaux F, Di Sanza C, Presutti C, Negri R. Role of Hog1 and Yaf9 in the transcriptional response of Saccharomyces cerevisiae to cesium chloride. Physiol Genomics. 33(1), pp.110-20 (2008).
Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RKanth, Lemoine S, Blugeon C, Boulay J, Jensen THeick, Stutz F, Devaux F, Libri D. THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell. 135(2), pp.308-21 (2008).
Payen C, Koszul R, Dujon B, Fischer G. Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. PLoS Genet. 4(9), pp.e1000175 (2008).
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret J-P, Chiovitti A, Choi CJae, Coesel S, De Martino A, J Detter C, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Le Secq M-POudot-, Napoli C, Obornik M, Parker MSchnitzler, Petit J-L, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, E Armbrust V, Green BR, Van de Peer Y, Grigoriev IV. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456(7219), pp.239-44 (2008).
Baussand J, Carbone A. Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues. Evol Bioinform Online. 4, pp.255-61 (2008).
Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F. Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata. Genome Biol. 9(11), pp.R164 (2008).
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo M-L. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 321(5891), pp.956-60 (2008).
Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F. Structure and properties of transcriptional networks driving selenite stress response in yeasts. BMC Genomics. 9, pp.333 (2008).
van den Heuvel MGL, Bondesan R, Cosentino Lagomarsino M, Dekker C. Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules. Phys Rev Lett. 101(11), pp.118301 (2008).

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