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Publications

Carbone A Cooperativity and symmetry at biological scales. in GROUP-24: Physical and Mathematical Aspects of Symmetries (Proceedings of the 24th International Colloquium on Group Theoretical Methods in Physics, Paris, 15-20 Juillet 2002), Institute of Physics. Conference Series Number 173, Bristol and Philadelphia. Institute of Physics Publishing. pp. 51-60 (2003)
Carbone A, Seeman NC. Coding and geometrical shapes in nanostructures: a fractal DNA-assembly. Natural Computing. 2, pp.133–151 (2003).
Carbone A, Zinovyev A, Képès F. Codon adaptation index as a measure of dominating codon bias. Bioinformatics. 19(16), pp.2005-15 (2003).
Wenner T, Roth V, Fischer G, Fourrier C, Aigle B, Decaris B, Leblond P. End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens. Mol Microbiol. 50(2), pp.411-25 (2003).
Merendino L, Falciatore A, Rochaix J-D. Expression and RNA binding properties of the chloroplast ribosomal protein S1 from Chlamydomonas reinhardtii. Plant Mol Biol. 53(3), pp.371-82 (2003).
Mishra B, Daruwala R-S, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, Spivak M, Feng J, Gill O, Venkatesh M, Cheng F, Sun B, Ioniata I, Anantharaman T, E Hubbard JAlbert, Pnueli A, Harel D, Chandru V, Hariharan R, Wigler M, Park F, Lin S-C, Lazebnik Y, Winkler F, Cantor CR, Carbone A, Gromov M. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. OMICS. 7(3), pp.253-68 (2003).
Richard H, Nuel G. SPA: Simple web tool to assess statistical significance of DNA patterns. Nucleic Acids Res. 31(13), pp.3679-81 (2003).
Ganem C, Devaux F, Torchet C, Jacq C, Quevillon-Cheruel S, Labesse G, Facca C, Faye G. Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast. EMBO J. 22(7), pp.1588-98 (2003).
Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C. A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast. J Biol Chem. 278(13), pp.11427-32 (2003).
Kuthan M, Devaux F, Janderová B, Slaninova I, Jacq C, Palková Z. Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology. Mol Microbiol. 47(3), pp.745-54 (2003).
Cosentino Lagomarsino M, Jona P, Bassetti B. Metachronal waves for deterministic switching two-state oscillators with hydrodynamic interaction. Phys Rev E Stat Nonlin Soft Matter Phys. 68(2 Pt 1), pp.021908 (2003).
Robelin D, Richard H, Prum B. SIC: A tool to detect short inverted segments in a biological sequence. Nucleic Acids Res. 31(13), pp.3669-71 (2003).
Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C. Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon. J Biol Chem. 278(52), pp.52641-50 (2003).
Cosentino Lagomarsino M, Capuani F, Lowe C P. A simulation study of the dynamics of a driven filament in an Aristotelian fluid. ArXiv Physics e-prints. (2002).
Falciatore A, Formiggini F, Bowler C Reporter genes for plant cells. in Molecular Plant Biology: A Pratical Approach. 2, pp. 265 - 283 (2002)

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