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Publications

Cicuta GM, Onofri E, Cosentino Lagomarsino M, Cicuta P. Patterns of synchronization in the hydrodynamic coupling of active colloids. Phys Rev E Stat Nonlin Soft Matter Phys. 85(1 Pt 2), pp.016203 (2012).
Grassi L, Grilli J, Cosentino Lagomarsino M. Large-scale dynamics of horizontal transfers. Mob Genet Elements. 2(3), pp.163-167 (2012).
Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proc Natl Acad Sci U S A. 109(26), pp.10340-5 (2012).
Dib L, Carbone A. CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinformatics. 13, pp.194 (2012).
Xu Z, Adrover M, Pastore A, Prigent S, Mouthon F, Comoy E, Rezaei H, Deslys J-P. Mechanistic insights into cellular alteration of prion by poly-D-lysine: the role of H2H3 domain. FASEB J. 25(10), pp.3426-35 (2011).
Xu Z, Prigent S, Deslys J-P, Rezaei H. Dual conformation of H2H3 domain of prion protein in mammalian cells. J Biol Chem. 286(46), pp.40060-8 (2011).
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, IM Rouzine, Coffin JM. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc Natl Acad Sci U S A. 108(14), pp.5661-6 (2011).
Oteri F, Falconi M, Chillemi G, Andersen FF, Oliveira CLP, Pedersen JS, Knudsen BR, Desideri A. Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability. J. Phys. Chem. C. 115, pp.16819–16827 (2011).
Vassallo O, Castelli S, Biswas A, Sengupta S, Das PK, D’Annessa I, Oteri F, Leoni A, Tagliatesta P, Majumder HK. Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes. Open Antimicrob. Agents J. 3, pp.23–29 (2011).
Carbone A, Dib L. Co-evolution and information signals in biological sequences. Theoretical Computer Science. 412, pp.2486 - 2495 (2011).
Procaccini A, Lunt B, Szurmant H, Hwa T, Weigt M. Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks. Rattray M (Eds.). PLoS One. 6, pp.e19729 (2011).
Goudot C, Etchebest C, Devaux F, Lelandais G. The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins. PLoS One. 6(6), pp.e20924 (2011).
Drillon G, Fischer G. Comparative study on synteny between yeasts and vertebrates. C R Biol. 334(8-9), pp.629-38 (2011).
Pakdaman K, Perthame B, Salort D. Relaxation and self-sustained oscillations in the time elapsed neuron network model. ArXiv e-prints. (2011).
Mäder U, Nicolas P, Richard H, Bessières P, Aymerich S. Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods. Curr Opin Biotechnol. 22(1), pp.32-41 (2011).

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