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Publications

Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KRei, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, Mutai B, Neches RY, Ng A, Nikolayeva O, Nikolayeva T, Png E, Ryon KA, Sanchez JL, Shaaban H, Sierra MA, Thomas D, Young B, Abudayyeh OO, Alicea J, Bhattacharyya M, Blekhman R, Castro-Nallar E, Cañas AM, Chatziefthimiou AD, Crawford RW, De Filippis F, Deng Y, Desnues C, Dias-Neto E, Dybwad M, Elhaik E, Ercolini D, Frolova A, Gankin D, Gootenberg JS, Graf AB, Green DC, Hajirasouliha I, Hastings JJA, Hernandez M, Iraola G, Jang S, Kahles A, Kelly FJ, Knights K, Kyrpides NC, Łabaj PP, Lee PKH, Leung MHY, Ljungdahl PO, Mason-Buck G, McGrath K, Meydan C, Mongodin EF, Moraes MOzorio, Nagarajan N, Nieto-Caballero M, Noushmehr H, Oliveira M, Ossowski S, Osuolale OO, Özcan O, Paez-Espino D, Rascovan N, Richard H, Rätsch G, Schriml LM, Semmler T, Sezerman OU, et al.. A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . (2021).
Blaiseau PLouis, Holmes AM. Diauxic Inhibition: Jacques Monod's Ignored Work. J Hist Biol. (2021).
Panlilio M, Grilli J, Tallarico G, Iuliani I, Sclavi B, Cicuta P, Cosentino Lagomarsino M. Threshold accumulation of a constitutive protein explains E. coli cell-division behavior in nutrient upshifts. Proceedings of the National Academy of Sciences. 118, (2021).
Droghetti R, Agier N, Fischer G, Gherardi M, Cosentino Lagomarsino M. An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles. Krishna S (Eds.). eLife. 10, pp.e63542 (2021).
Chaux F, O'Donnell S, Craig RJ, Eberhard S, Vallon O, Xu Z. Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii. Nucleic Acids Res. pp.2021.01.29.428817 (2021).
Fischer G, Liti G, Llorente B. The budding yeast life cycle: More complex than anticipated?. Yeast. 38(1), pp.5-11 (2021).
Agier N, Fleiss A, Delmas S, Fischer G A Versatile Protocol to Generate Translocations in Yeast Genomes Using CRISPR/Cas9. in Yeast Protocols. New York, NY. Springer US. pp. 181–198 (2021)
Mardones W, Villarroel CA, Krogerus K, Tapia SM, Urbina K, Oporto CI, O'Donnell S, Minebois R, Nespolo R, Fischer G, Querol A, Gibson B, Cubillos FA. Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates. Microbial Biotechnology. 13, pp.1012-1025 (2020).
Crozat E, Tardin C, Salhi M, Rousseau P, Lablaine A, Bertoni T, Holcman D, Sclavi B, Cicuta P, Cornet F. Post-replicative pairing of sister ter regions in Escherichia coli involves multiple activities of MatP. Nature Commun. 11(1), pp.3796 (2020).
Cristofalo M, Marrano CA, Salerno D, Corti R, Cassina V, Sclavi B, Gherardi M, Mammola A, M. Lagomarsino C, Mantegazza F. Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by Magnetic Tweezers. Biochimica et Biophysica Acta (BBA) - General Subjects. 1864(12), pp.129725 (2020).
Si Y, Grazon C, Clavier G, Rieger J, Tian Y, Audibert J-F, Sclavi B, Méallet-Renault R. Fluorescent copolymers for bacterial bioimaging and viability detection. ACS SensorsACS Sensors. (2020).
O'Donnell S, Chaux F, Fischer G. Highly contiguous nanopore genome assembly of Chlamydomonas reinhardtii CC-1690. Microbiol Resour Announc. (2020).
Drillon G, Champeimont R, Oteri F, Fischer G, Carbone A*. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
O'Donnell S, Fischer G. MUM&Co: Accurate detection of all SV types through whole genome alignment. Bioinformatics (Oxford, England). 36(10), pp.3242-3243 (2020).
Yousuf M, Iuliani I, Veetil RT, Seshasayee A S N, Sclavi B, Cosentino Lagomarsino M. Early fate of exogenous promoters in E. coli. Nucleic Acids Research. (2020).

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