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Publications

Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O.
Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria.
Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017).
Dequeker C, Laine E, Carbone A.
INTerface Builder: a fast protein-protein interface reconstruction tool.
J Chem Inf Model. (2017).
Lidsky PV, Andino R, IM Rouzine.
Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.
Curr Opin Virol. 23, pp.120-124 (2017).
Nadalin F, Carbone A.
Protein-protein interaction specificity is captured by contact preferences and interface composition.
Bioinformatics. (2017).
Nayeem SM, Oteri F, Baaden M, Deep S.
Residues of Alpha Helix H3 Determine Distinctive Features of Transforming Growth Factor β3.
The Journal of Physical Chemistry B. 121, pp.5483-5498 (2017).
De Lazzari E, Grilli J, Maslov S, Cosentino Lagomarsino M.
Family-specific scaling laws in bacterial genomes.
Nucleic Acid Research. (2017).
Klippenstein V, Hoppmann C, Ye-Lehmann S, Wang L, Paoletti P.
Optocontrol of glutamate receptor activity by single side-chain photoisomerization.
Elife. 6, (2017).
Bernardes JS, Vaquero C, Carbone A.
Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes.
Malar J. 16(1), (2017).
Jaubert M, Bouly J-P, d'Alcalà MRibera, Falciatore A.
Light sensing and responses in marine microalgae.
Curr Opin Plant Biol. 37, pp.70-77 (2017).
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, E Armbrust V, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Nature. 541(7638), pp.536-540 (2017).
Laine E
Decrypting how protein move and change their shape.
in Proceeding of 16th International Symposium on Mathematical and Computational Biology. Edited by: Rubem P Mondaini (Federal University of Rio de Janeiro, Brazil). Nankai University, Tianjin, China, 30th Oct. – 5th Nov. 2016. Chern Institute of Mathematics. (2017)
Carbone A
Conservation, co-évolution et dynamique : de la séquence à la fonction.
in Colloque de Cerisy “Sciences de la vie, sciences de l’information”. Edited by: Maurel M-C., Pomerol J-C., Gaudin T., Lacroix D., ISTE Éditions Ltd (2017)
Gherardi M, Cosentino Lagomarsino M
Procedures for model-guided data analysis of chromosomal loci dynamics at short time scales.
in Methods in Molecular Biology. The Bacterial Nucleoid - Methods and Protocols . Edited by: Espeli, Olivier. Springer Publishing Company, Incorporated. (2017)
Dal Co A, Cosentino Lagomarsino M, Caselle M, Osella M.
Stochastic timing in gene expression for simple regulatory strategies.
Nucleic Acids Research. 45, pp.1069 (2017).
Dell’Aquila G, Ferrante M, Gherardi M, Cosentino Lagomarsino M, d’Alcala MRibera, Iudicone D, Amato A.
Nutrient consumption and chain tuning in diatoms exposed to storm-like turbulence.
Scientific Reports. (2017).

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