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Publications

Coesel S, Mangogna M, Ishikawa T, Heijde M, Rogato A, Finazzi G, Todo T, Bowler C, Falciatore A.
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity.
EMBO Rep. 10(6), pp.655-61 (2009).
Koszul R, Fischer G.
A prominent role for segmental duplications in modeling eukaryotic genomes.
C R Biol. 332(2-3), pp.254-66 (2009).
Ciandrini L, Maffi C, Motta A, Bassetti B, Cosentino Lagomarsino M.
Feedback topology and XOR-dynamics in Boolean networks with varying input structure.
Phys Rev E Stat Nonlin Soft Matter Phys. 80(2 Pt 2), pp.026122 (2009).
Hu H, Wrogemann K, Kalscheuer V, Tzschach A, Richard H, Haas SA, Menzel C, Bienek M, Froyen G, Raynaud M, Van Bokhoven H, Chelly J, Ropers H, Chen W.
Erratum to: Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing.
Hugo J. 3(1-4), pp.83 (2009).
De Riso V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A.
Gene silencing in the marine diatom Phaeodactylum tricornutum.
Nucleic Acids Res. 37(14), pp.e96 (2009).
Payen C, Fischer G, Marck C, Proux C, Sherman DJames, Coppée J-Y, Johnston M, Dujon B, Neuvéglise C.
Unusual composition of a yeast chromosome arm is associated with its delayed replication.
Genome Res. 19(10), pp.1710-21 (2009).
Cosentino Lagomarsino M, Bassetti B, Castellani G, Remondini D.
Functional models for large-scale gene regulation networks: realism and fiction.
Mol Biosyst. 5(4), pp.335-44 (2009).
Baussand J, Carbone A.
A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.
PLoS Comput Biol. 5(9), pp.e1000488 (2009).
Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H.
High-resolution protein complexes from integrating genomic information with molecular simulation.
Proc Natl Acad Sci U S A. 106(52), pp.22124-9 (2009).
Souciet J-L, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val M-E, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret M-L, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, De Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard G-F, Sacerdot C, Straub M-L, Talla E.
Comparative genomics of protoploid Saccharomycetaceae.
Genome Res. 19(10), pp.1696-709 (2009).
Sclavi B.
Time-resolved footprinting for the study of the structural dynamics of DNA-protein interactions.
Biochem Soc Trans. 36(Pt 4), pp.745-8 (2008).
Menezes RA, Amaral C, Batista-Nascimento L, Santos C, Ferreira RBoavida, Devaux F, Eleutherio ECA, Rodrigues-Pousada C.
Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress.
Biochem J. 414(2), pp.301-11 (2008).
Brunet E, IM Rouzine, Wilke CO.
The stochastic edge in adaptive evolution.
Genetics. 179(1), pp.603-20 (2008).
Dutta RN, IM Rouzine, Smith SD, Wilke CO, Novella IS.
Rapid adaptive amplification of preexisting variation in an RNA virus.
J Virol. 82(9), pp.4354-62 (2008).
IM Rouzine, Brunet E, Wilke CO.
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.
Theor Popul Biol. 73(1), pp.24-46 (2008).

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