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Publications

Baussand J, Deremble C, Carbone A.
Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
Proteins. 67(3), pp.695-708 (2007).
Carbone A
Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification.
in Proceedings of the Evry Spring School on Modelling Complex Biological Systems in the Context of Genomics. Genopole, Evry. EDP Sciences. (2007)
Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C.
Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes.
Mol Biol Cell. 18(2), pp.362-8 (2007).
Cosentino Lagomarsino M, Tanase C, Vos JW, Emons AMie C, Mulder BM, Dogterom M.
Microtubule organization in three-dimensional confined geometries: evaluating the role of elasticity through a combined in vitro and modeling approach.
Biophys J. 92(3), pp.1046-57 (2007).
Garcia M, Darzacq X, Devaux F, Singer RH, Jacq C.
Yeast mitochondrial transcriptomics.
Methods Mol Biol. 372, pp.505-28 (2007).
Llopis I, Pagonabarraga I, Cosentino Lagomarsino M, Lowe CP.
Sedimentation of pairs of hydrodynamically interacting semiflexible filaments.
Phys Rev E Stat Nonlin Soft Matter Phys. 76(6 Pt 1), pp.061901 (2007).
Bassetti F, Cosentino Lagomarsino M, Bassetti B, Jona P.
Random networks tossing biased coins.
Phys Rev E Stat Nonlin Soft Matter Phys. 75(5 Pt 2), pp.056109 (2007).
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore A, Bowler C.
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum.
Gene. 406(1-2), pp.23-35 (2007).
Fusco D, Bassetti B, Jona P, Cosentino Lagomarsino M.
DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks.
Bioinformatics. 23(24), pp.3388-90 (2007).
Leone M, Weigt M.
Clustering by soft-constraint affinity propagation: applications to gene-expression data.
Bioinformatics. 23(20), pp.2708-15 (2007).
Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F.
The central role of PDR1 in the foundation of yeast drug resistance.
J Biol Chem. 282(7), pp.5063-74 (2007).
Cosentino Lagomarsino M, Jona P, Bassetti B, Isambert H.
Hierarchy and feedback in the evolution of the Escherichia coli transcription network.
Proc Natl Acad Sci U S A. 104(13), pp.5516-20 (2007).
IM Rouzine, Sergeev RA, Glushtsov AI.
Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus.
Proc Natl Acad Sci U S A. 103(3), pp.666-71 (2006).
Sacquin-Mora S, Lavery R, Trojan LA, Carbone A
Une opération de docking croisé à grande échelle pour la détection de partenaires protéiques potentiels.
in Proceedings of the workshop "Mathématiques et Interactions". Paris France. Institut Henri Poincaré. (2006)
Cosentino Lagomarsino M, Jona P, Bassetti B
Randomization and feedback properties of directed graphs inspired by gene networks.
in Computational Methods in Systems Biology. Springer. pp. 227–241 (2006)

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