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Publications

Carbone A.
Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison.
Handelingen van de Koninklijke Vlaamse Academie van Belgie voor Wetenschappen en Kunsten. (2005).
Wyers F, Rougemaille M, Badis G, Rousselle J-C, Dufour M-E, Boulay J, Régnault B, Devaux F, Namane A, Séraphin B, Libri D, Jacquier A.
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Cell. 121(5), pp.725-37 (2005).
Falciatore A, Bowler C.
The evolution and function of blue and red light photoreceptors.
Curr Top Dev Biol. 68, pp.317-50 (2005).
Zhang X, Kolaczkowska A, Devaux F, Panwar SLata, Hallstrom TC, Jacq C, W Moye-Rowley S.
Transcriptional regulation by Lge1p requires a function independent of its role in histone H2B ubiquitination.
J Biol Chem. 280(4), pp.2759-70 (2005).
Falciatore A, Merendino L, Barneche F, Ceol M, Meskauskiene R, Apel K, Rochaix J-D.
The FLP proteins act as regulators of chlorophyll synthesis in response to light and plastid signals in Chlamydomonas.
Genes Dev. 19(1), pp.176-87 (2005).
Cosentino Lagomarsino M, Jona P, Bassetti B.
Logic backbone of a transcription network.
Phys Rev Lett. 95(15), pp.158701 (2005).
Carbone A, Madden R.
Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis.
J Mol Evol. 61(4), pp.456-69 (2005).
Cosentino Lagomarsino M, Pagonabarraga I, Lowe CP.
Hydrodynamic induced deformation and orientation of a microscopic elastic filament.
Phys Rev Lett. 94(14), pp.148104 (2005).
Lucau-Danila A, Lelandais G, Kozovska Z, Tanty V, Delaveau T, Devaux F, Jacq C.
Early expression of yeast genes affected by chemical stress.
Mol Cell Biol. 25(5), pp.1860-8 (2005).
Zumdieck A, Cosentino Lagomarsino M, Tanase C, Kruse K, Mulder B, Dogterom M, Jülicher F.
Continuum description of the cytoskeleton: ring formation in the cell cortex.
Phys Rev Lett. 95(25), pp.258103 (2005).
Ye S, Strzalka J, Churbanova IY, Zheng S, Johansson JS, J Blasie K.
A model membrane protein for binding volatile anesthetics.
Biophys J. 87(6), pp.4065-74 (2004).
Ye S, Strzalka JW, Discher BM, Noy D, Zheng S, P Dutton L, J Blasie K.
Amphiphilic 4-helix bundles designed for biomolecular materials applications.
Langmuir. 20(14), pp.5897-904 (2004).
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich J-M, Beyne E, Bleykasten C, Boisrame A, Boyer J, Cattolico L, Confanioleri F, de Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud J-M, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard G-F, Straub M-L, Suleau A, Swennen D, Tekaia F, Wesolowski-Louvel MICHELINE, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet J-L.
Genome evolution in yeasts.
Nature. 430(6995), pp.35 - 44 (2004).
Carbone A, Mao C, Constantinou PE, Ding B, Kopatsch J, Sherman WB, Seeman NC.
3D fractal DNA assembly from coding, geometry and protection.
Natural Computing. 3, pp.235–252 (2004).
Carbone A, Seeman NC
Molecular tiling and DNA self-assembly.
in Aspects of Molecular Computing. Springer. pp. 61–83 (2004)

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