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Publications

Oteri F, Nadalin F, Champeimont R, Carbone A.
BIS2Analyzer: a server for coevolution analysis of conserved protein families.
Nucleic Acids Research. (2017).
Yue J-X, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergstrom A, Coupland P, Warringer J, Cosentino Lagomarsino M, Fischer G, Durbin R, Liti G.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Nat Genet. 49(6), pp.913-924 (2017).
Lepetit B, Gelin G, Lepetit M, Sturm S, Vugrinec S, Rogato A, Peter K, Falciatore A, Lavaud J.
The diatom Phaeodactylum tricornutum adjusts NPQ capacity in response to dynamic light via fine-tuned Lhcx and xanthophyll cycle pigment synthesis.
New Phytologist. 214(1), pp.1469-8137 (2017).
Laine E, Carbone A.
Protein social behaviour makes a stronger signal for partner identification than surface geometry.
Proteins. 85(1), pp.137-154 (2017).
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
ISME J. 10(11), pp.2557-2568 (2016).
Rast LI, IM Rouzine, Rozhnova G, Bishop L, Weinberger AD, Weinberger LS.
Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals.
PLoS Comput Biol. 12(5), pp.e1004799 (2016).
Xiao Y, IM Rouzine, Bianco S, Acevedo A, Goldstein EFaul, Farkov M, Brodsky L, Andino R.
RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.
Cell Host Microbe. 19(4), pp.493-503 (2016).
Tian M, Ye-Lehmann S.
Allosteric regulation in NMDA receptors revealed by the genetically encoded photo-cross-linkers.
Scientific Reports. 6, pp.34751 (2016).
Chen Y, Ma J, Lu W, Tian M, Thauvin M, Yuan C, Volovitch M, Wang Q, Holst J, Liu M, Vriz S, Ye-Lehmann S, Wang L, Li D.
Heritable expansion of the genetic code in mouse and zebrafish.
Cell Res. (2016).
Chen Y, Lu W, Gao N, Long Y, Shao Y, Liu M, Chen H, Ye S, Ma X, Liu M, Li D.
Generation of obese rat model by transcription activator-like effector nucleases targeting the leptin receptor gene.
Sci China Life Sci. (2016).
Barrat-Charlaix P, Figliuzzi M, Weigt M.
Improving landscape inference by integrating heterogeneous data in the inverse Ising problem.
Sci. Rep. 6, 37812, (2016).
Coucke A, Uguzzoni G, Oteri F, Cocco S, Monasson R, Weigt M.
Direct coevolutionary couplings reflect biophysical residue interactions in proteins.
The Journal of Chemical Physics. 145, pp.174102-17 (2016).
Delaveau T, Davoine D, Jolly A, Vallot A, Rouviere JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M.
Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.
Nucleic Acids Res. 44(18), pp.8826-8841 (2016).
Ripoche H, Laine E, Ceres N, Carbone A.
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.
Nucleic Acids Research. (2016).
Hannezo E, Coucke A, Joanny J-F.
Interplay of migratory and division forces as a generic mechanism for stem cell patterns.
Phys. Rev. E. 93, pp.022405 (2016).

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