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Publications

Oteri F, Baaden M, Lojou E, Sacquin-Mora S.
Multiscale simulations give insight into the hydrogen in and out pathways of [NiFe]-hydrogenases from Aquifex aeolicus and Desulfovibrio fructosovorans.
J Phys Chem B. 118(48), pp.13800-11 (2014).
Oteri F, Ciaccafava A, de Poulpiquet A, Baaden M, Lojou E, Sacquin-Mora S.
The weak, fluctuating, dipole moment of membrane-bound hydrogenase from Aquifex aeolicus accounts for its adaptability to charged electrodes.
Phys Chem Chem Phys. 16(23), pp.11318-22 (2014).
Lee M-Y, Borgiani P, Johansson I, Oteri F, Mkrtchian S, Falconi M, Ingelman-Sundberg M.
High warfarin sensitivity in carriers of CYP2C9*35 is determined by the impaired interaction with P450 oxidoreductase.
Pharmacogenomics J. 14(4), pp.343-9 (2014).
Morcos F, Hwa T, Onuchic JN, Weigt M
Direct Coupling Analysis for Protein Contact Prediction.
in Methods in Molecular Biology, Protein Structure Prediction. 1137, Springer New York. pp. 55-70 (2014)
Dhamgaye S, Devaux F, Vandeputte P, Khandelwal NKumar, Sanglard D, Mukhopadhyay G, Prasad R.
Molecular mechanisms of action of herbal antifungal alkaloid berberine, in Candida albicans.
PLoS One. 9(8), pp.e104554 (2014).
Drillon G, Carbone A, Fischer G.
SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes.
PLoS One. 9(3), pp.e92621 (2014).
Champeimont R, Carbone A.
SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis.
BMC Bioinformatics. 15, pp.391 (2014).
Mandrà S, Cosentino Lagomarsino M, Gherardi M.
Soft bounds on diffusion produce skewed distributions and Gompertz growth.
Phys. Rev. E. 90, pp.032805 (2014).
Long Z, Olliver A, Brambilla E, Sclavi B, Cosentino Lagomarsino M, Dorfman KD.
Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy.
Analyst. 139, pp.5254-5262 (2014).
Bretes H, Rouviere JO, Leger T, Oeffinger M, Devaux F, Doye V, Palancade B.
Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs.
Nucleic Acids Res. 42(8), pp.5043-58 (2014).
Pakdaman K, Perthame B, Salort D.
Adaptation and fatigue model for neuron networks and large time asymptotics in a nonlinear fragmentation equation.
Journal of Mathematical Neurosciences. 4(14), (2014).
Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.
Filling annotation gaps in yeast genomes using genome-wide contact maps.
Bioinformatics. 30(15), pp.2105-13 (2014).
Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès J-C, Collin C, Lasne F, Benusiglio PR, de Paillerets BBressac-, Feunteun J, Lazar V, Gimenez-Roqueplo A-P, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B.
Genetic Evidence of a Precisely Tuned Dysregulation in the Hypoxia Signaling Pathway during Oncogenesis.
Cancer Res. 74(22), pp.6554-64 (2014).
Merhej J, Frigo A, Le Crom S, Camadro J-M, Devaux F, Lelandais G.
bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.
Yeast. 31, pp.375–391 (2014).
Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H.
Fiona: a parallel and automatic strategy for read error correction.
Bioinformatics. 30(17), pp.i356-63 (2014).

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