Software

Accurate and flexible methods for DNA methylation analysis, based on hidden Markov models

Automatic correction of read error from genome sequencing experiments.

CLAG (for CLusters AGgregation) is an unsupervised non hierarchical clustering algorithm.

A study of protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information.

A tool to find microRNA structural clusters at genome scale and from deep sequencing data.