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yMGV: a database for visualization and data mining of published genome-wide yeast expression data.

TitleyMGV: a database for visualization and data mining of published genome-wide yeast expression data.
Publication TypeJournal Article
Year of Publication2001
AuthorsMarc, P, Devaux, F, Jacq, C
JournalNucleic Acids Res
Volume29
Issue13
PaginationE63-3
Date Published2001 Jul 01
ISSN1362-4962
KeywordsComputational Biology, Databases as Topic, Gene Expression, Gene Expression Profiling, Gene Expression Regulation, Fungal, Genes, Fungal, Genome, Fungal, Internet, Oligonucleotide Array Sequence Analysis, Research Design, RNA, Fungal, Saccharomyces cerevisiae, Statistics as Topic, Transcription, Genetic, User-Computer Interface
Abstract

The yeast Microarray Global Viewer (yMGV) is an on-line database providing a synthetic view of the transcriptional expression profiles of Saccharomyces cerevisiae genes in most of the published expression datasets. yMGV displays a one-screen graphical representation of gene expression variations for each published genome-wide experiment, allowing quick retrieval of experimental conditions affecting expression of this gene. yMGV also provides tools to isolate groups of genes sharing similar transcription profiles in a defined subset of experiments. Additionally, yMGV furnishes a set of statistical tools for critical assessment of published data. We therefore believe that yMGV is an efficient tool that affords a quick and comprehensive overview of microarray data and generates new gene classifications. As of 20 March 2001 the yMGV database contains 6 000 000 measurements, representing genome-wide expression comparisons of 932 experiments from 39 microarray publications. The yMGV interface is available at http://transcriptome.ens.fr/ymgv/.

Alternate JournalNucleic Acids Res.
PubMed ID11433039
PubMed Central IDPMC55787