Hugues Richard, Assistant professor

Courses

Specialty	Course Name	Acronym	level	Description
Computational Biology	Sequence analysis and word statistics	SBASS	Master
	Phylogeny	PHYLO	Master
	Microarray & RNA-Seq analysis		Master	Course for a summer school
	NGS data analysis	PHYG files for the tutorials	Master
Statistics	Inferential statistics and Hypothesis testing	LI323	bachelor
Statistics	Classification and Pattern matching	SCLASS	Master
Computer Science	Introduction to Algorithms and Python programming	LBM - 1I001	Bachelor	Course for the Biology and Mathematics bachelor program (UPMC-Roscoff)
	Algorithms and Data structures	LI216	Bachelor
	Structures discrètes	LI214	Bachelor
	C programming	LI215	Bachelor

PhD Students

(Oct. 2017-) Laurent David (joint with Alessandra Carbone):
Predicting protein interactions from metagenomic data
(Oct. 2017-) Robert Clerc (joint with Laurent Mesnard, MD PhD, Tenon Hospital):
Refinement of the allogenomics concept in renal transplantation
(2010-2014) Bogdan Mirauta (joint with Pierre Nicolas, INRA Jouy en Josas):
Estimating Transcriptional Rates from RNA-Seq data
(2007-10) Marcel H. Schulz (joint with M. Vingron MPI Molecular Genetics, K. Reinert Free University, Berlin):

Master Students

(April-September 2014) Adel Ait-Amlat (joint with E. Laine): Phylogenetic reconstruction of transcript isoform evolutions
(February-August 2013) Madjid Bessoul: Inferring methylation level from bisulfite sequencing experiments
(April-September 2010): Bogdan Mirauta: Inferring transcriptional rate with sequential Monte-Carlo methods.
Master projects (3 months):
- Analysis of bisulfite sequencing data
- Correction of sequencing errors with a suffix tree approach
- Annotation of proteins with variable order markov chains
- Evaluating various segmentation methods for the analysis of transcriptome data