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Francesco Oteri
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iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. Nucleic Acids Research. (2022).
. A large disordered region confers a wide spanning volume to vertebrate Suppressor of Fused as shown in a trans-species solution study. Journal of Structural Biology. pp.107853 (2022).
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MyCLADE: a multi-source domain annotation server for sequence functional exploration. Nucleic Acids Research. (2021).
. COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Research. (2020).
. Phylogenetic reconstruction based on synteny block and gene adjacencies. Molecular Biology and Evolution. 37(9), pp.2747–2762 (2020).
. BIS2Analyzer: a server for coevolution analysis of conserved protein families. Nucleic Acids Research. (2017).
. Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis. Proceedings of the National Academy of Sciences. 114, pp.E2662-E2671 (2017).
. Residues of Alpha Helix H3 Determine Distinctive Features of Transforming Growth Factor β3. The Journal of Physical Chemistry B. 121, pp.5483-5498 (2017).
. Direct coevolutionary couplings reflect biophysical residue interactions in proteins. The Journal of Chemical Physics. 145, pp.174102-17 (2016).
. Molecular mechanism of statin-mediated LOX-1 inhibition. Cell Cycle. 14, pp.1583-1595 (2015).
. High warfarin sensitivity in carriers of CYP2C9*35 is determined by the impaired interaction with P450 oxidoreductase. Pharmacogenomics J. 14(4), pp.343-9 (2014).
. Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family. (Eds.). Biopolymers. 101, pp.992–999 (2014).
. Multiscale simulations give insight into the hydrogen in and out pathways of [NiFe]-hydrogenases from Aquifex aeolicus and Desulfovibrio fructosovorans. J Phys Chem B. 118(48), pp.13800-11 (2014).
. The weak, fluctuating, dipole moment of membrane-bound hydrogenase from Aquifex aeolicus accounts for its adaptability to charged electrodes. Phys Chem Chem Phys. 16(23), pp.11318-22 (2014).
. Simulative and experimental investigation on the cleavage site that generates the soluble human LOX-1. Arch Biochem Biophys. 540(1-2), pp.9-18 (2013).
. Mapping multiple potential ATP binding sites on the matrix side of the bovine ADP/ATP carrier by the combined use of MD simulation and docking. J Mol Model. 18(6), pp.2377-86 (2012).
. Characterization of a novel CYP2C9 gene mutation and structural bioinformatic protein analysis in a warfarin hypersensitive patient. Pharmacogenet Genomics. 21(6), pp.344-6 (2011).
. Conjugated eicosapentaenoic acid (cEPA) inhibits L. donovani topoisomerase I and has an antiproliferative activity against L. donovani promastigotes. Open Antimicrob. Agents J. 3, pp.23–29 (2011).
. Effect of the charge distribution along the "ferritin-like" pores of the proteins from the Dps family on the iron incorporation process. J Biol Inorg Chem. 16(6), pp.869-80 (2011).
. Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability. J. Phys. Chem. C. 115, pp.16819–16827 (2011).
. Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport. J Comput Aided Mol Des. 25(2), pp.181-94 (2011).
. ADP/ATP mitochondrial carrier MD simulations to shed light on the structural-dynamical events that, after an additional mutation, restore the function in a pathological single mutant. J Struct Biol. 172(3), pp.225-32 (2010).
. Structure of nanoscale truncated octahedral DNA cages: variation of single-stranded linker regions and influence on assembly yields. ACS Nano. 4(3), pp.1367-76 (2010).
. Conjugated eicosapentaenoic acid inhibits human topoisomerase IB with a mechanism different from camptothecin. Arch Biochem Biophys. 486(2), pp.103-10 (2009).
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