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Publications

Bernardes JS, Vieira FRJ, Zaverucha G, Carbone A*. A multi-objective optimization approach accurately resolves protein domain architectures. Bioinformatics. (2015).
Gillet-Markowska A, Louvel G, Fischer G. bz-rates: A Web Tool to Estimate Mutation Rates from Fluctuation Analysis. G3: Genes|Genomes|Genetics. (2015).
Gillet-Markowska A, Richard H, Fischer G, Lafontaine I. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinformatics. 31(6), pp.801-8 (2015).
Merhej J, Delaveau T, Guitard J, Palancade B, Hennequin C, Garcia M, Lelandais G, Devaux F. Yap7 is a Transcriptional Repressor of Nitric Oxide Oxidase in Yeasts, which arose from Neofunctionalization after Whole Genome Duplication. Mol Microbiol. (2015).
Figliuzzi M, De Martino A, Marinari E. RNA-Based Regulation: Dynamics and Response to Perturbations of Competing RNAs. Biophysical Journal. 107(4), pp.1011-1022 (2015).
Scolari VF, Cosentino Lagomarsino M. Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid. Soft Matter. 11, pp.1677-1687 (2015).
Zamparo M, Chianale F, Tebaldi C, Cosentino Lagomarsino M, Nicodemi M, Gamba A. Dynamic membrane patterning, signal localization and polarity in living cells. Soft matter. 11, pp.838–849 (2015).
Bernardes JS, Vieira F, Costa L, Zaverucha G. Evaluation and improvements of clustering algorithms for detecting remote homologous protein families. BMC Bioinformatics. 16(1), pp.34 (2015).
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J. Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast. Molecular Biology and Evolution. 32(1), (2015).
Fortunato AE, Annunziata R, Jaubert M, Bouly J-P, Falciatore A. Dealing with light: The widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms. J Plant Physiol. 172, pp.42-54 (2015).
Fumagalli MR, Osella M, Thomen P, Heslot F, Cosentino Lagomarsino M. Speed of evolution in large asexual populations with diminishing returns. Journal of Theoretical Biology. 365, pp.23-31 (2015).
Heyno E, Innocenti G, Lemaire SD, Issakidis-Bourguet E, Krieger-Liszkay A. Putative role of the malate valve enzyme NADP-malate dehydrogenase in H2O2 signalling in Arabidopsis. Philos Trans R Soc Lond B Biol Sci. 369, pp.20130228 (2014).
Morisse S, Zaffagnini M, Gao XH, Lemaire SD, Marchand CH. Insight into protein S-nitrosylation in Chlamydomonas reinhardtii. Antioxid Redox Signal. 21, pp.1271-84 (2014).
Pérez-Martin M, Perez-Perez ME, Lemaire SD, Crespo JL. Oxidative stress contributes to autophagy induction in response to endoplasmic reticulum stress in Chlamydomonas reinhardtii. Plant Physiol. 166, pp.997-1008 (2014).
Perez-Perez ME, Zaffagnini M, Marchand CH, Crespo JL, Lemaire SD. The yeast autophagy protease Atg4 is regulated by thioredoxin. Autophagy. 10, pp.1953-64 (2014).

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