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Publications

Pedruzzi G, Barlukova A, IM Rouzine.
Evolutionary footprint of epistasis.
PLOS Computational Biology. (In Press).
Shrestha AMS, Asai K, Frith M, Richard H.
A new framework for the identification of Genomic Structural Variant using Joint Alignment of Reads.
Nucleic Acids Research. (In Press).
Krakau S, Richard H, Marsico A.
PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data.
Genome Biology. (In Press).
Tian M, Ye-Lehmann S
Engineering light sensitive NMDARs.
in Methods in Molecular Biology. Edited by: Szepetowski P. and Burnashev N. John Wiley & Sons, Inc. (In Press)
Tian M, Wang Q, Ye-Lehmann S
Elucidating GPCR structural function relationship through genetic code expansion.
in Topics in Medicinal Chemistry. Edited by: Granier S. and Lebon G. Springer. (In Press)
IM Rouzine, Rozhnova G.
Antigenic evolution of viruses in host populations.
PLoS Pathogens. 14, (2018).
Muller H, Scolari VF, Agier N, le Piazza A, Thierry A, Mercy G, Descorps-Declere S, Lazar-Stefanita L, Espéli O, Llorente B, Fischer G, Mozziconacci J, Koszul R.
Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C.
Mol Syst Biol. 14(7), pp.e8293 (2018).
Ugarte A, Vicedomini R, Bernardes JS, Carbone A.
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
Microbiome. (2018).
Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino Lagomarsino M, Fischer G.
The evolution of the temporal program of genome replication.
Nat Commun. 9(1), pp.2199 (2018).
Taddei L, Chukhutsina V, Lepetit B, Stella GR, Bassi R, van Amerongen H, Bouly J-P, Jaubert M, Finazzi G, Falciatore A.
Dynamic changes between two LHCX-related energy quenching sites control diatom photoacclimation.
Plant Physiology. (2018).
Rouviere JO, Bulfoni M, Tuck A, Cosson B, Devaux F, Palancade B.
A SUMO-dependent feedback loop senses and controls the biogenesis of nuclear pore subunits.
Nat Commun. 9(1), pp.1665 (2018).
Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes JS, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine* E, Lopes* A.
Meet-U: Educating through research immersion.
PLOS Computational Biology. 14, pp.1-10 (2018).
Lagarde N, Carbone A, Sacquin-Mora S.
Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions.
PROTEINS: Structure, Function, and Bioinformatics. (2018).
Raucci R, Laine E, Carbone A.
Local Interaction Signal Analysis predicts protein-protein binding affinity.
Structure. (2018).
Figliuzzi M, Barrat-Charlaix P, Weigt M.
How Pairwise Coevolutionary Models Capture the Collective Residue Variability in Proteins?.
Molecular Biology and Evolution. pp.msy007 (2018).

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