|
Teano G, Concia L, Carron L, Wolff L, Adamusovà K, Fojtovà M, Kramdi A, Colot V, Grossniklaus U, Bowler C, Baroux C, Carbone A*, Probst A, Prochàzkovà P, Schrumpfovà, Fajkus J, Amiard S, Grob S, Bourbousse C, Barneche F. Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports. (In Press). |
|
Di Bari L, Bisardi M, Cotogno S, Weigt M, Zamponi F. Emergent time scales of epistasis in protein evolution. Proceedings of the National Academy of Sciences. 121, pp.e2406807121 (2024). |
|
Chen JZ, Bisardi M, Lee D, Cotogno S, Zamponi F, Weigt M, Tokuriki N. Understanding epistatic networks in the B1 β-lactamases through coevolutionary statistical modeling and deep mutational scanning. Nature Communications. 15, pp.8441 (2024). |
|
Calvanese F, Weigt M, Nghe P Generating Artificial Ribozymes Using Sparse Coevolutionary Models. in RNA Design: Methods and Protocols. Springer. pp. 217–228 (2024) |
|
Calvanese F, Lambert CN, Nghe P, Zamponi F, Weigt M. Towards parsimonious generative modeling of RNA families. Nucleic Acids Research. pp.gkae289 (2024). |
|
Meynard-Piganeau B, Feinauer C, Weigt M, Walczak AM, Mora T. TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes. Proceedings of the National Academy of Sciences. 121, pp.e2316401121 (2024). |
|
Meynard-Piganeau B, Fabbri C, Weigt M, Pagnani A, Feinauer C. Generating interacting protein sequences using domain-to-domain translation. Bioinformatics. 39, pp.btad401 (2023). |
|
Ciarella S, Trinquier J, Weigt M, Zamponi F. Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems. Machine Learning: Science and Technology. 4, pp.010501 (2023). |
|
Gandarilla-Pérez CA, Pinilla S, Bitbol A-F, Weigt M. Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comp Biol. 19(3), pp.e1011010 (2023). |
|
Seoane B, Carbone A*. Soft disorder modulates the assembly path of protein complexes. PLoS Comput Biol. 18(11), pp.e1010713 (2022). |
|
Wu J, Danko D, Afshinnekoo E, Bezdan D, Bhattacharyya M, Castro-Nallar E, Chmielarczyk A, Hazrin-Chong NHazlin, Deng Y, Dias-Neto E, Frolova A, Mason-Buck G, Iraola G, Jang S, Łabaj P, Lee PKH, Nieto-Caballero M, Osuolale OO, Ouzounis CA, Perlin MH, Prithiviraj B, Rascovan N, Różańska A, Schriml LM, Semmler T, Suzuki H, Ugalde JA, Young B, Werner J, Zambrano MMercedes, Zhao Y, Mason C, Shi T. Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. Environ Res. 207, pp.112183 (2022). |
|
Coutelier H, Ilioaia O, Le Peillet J, Hamon M, D'Amours D, Teixeira MTeresa, Xu Z. The Polo kinase Cdc5 is regulated at multiple levels in the adaptation response to telomere dysfunction. Genetics. (2022). |
|
Patteson JB, Fortinez CMarie, Putz AT, Rodriguez-Rivas J, L. Bryant H, Adhikari K, Weigt M, T. Schmeing M, Li B. Structure and Function of a Dehydrating Condensation Domain in Nonribosomal Peptide Biosynthesis. Journal of the American Chemical Society. 144(31), pp.14057 - 14070 (2022). |
|
Mohseni-Behbahani Y, Crouzet S, Laine E, Carbone A*. Deep Local Analysis evaluates protein docking conformations with locally oriented cubes. Bioinformatics. (2022). |
|
Vigué L, Croce G, Petitjean M, Ruppé E, Tenaillon O, Weigt M. Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes. Nature Communications. 13(1), pp.4030 (2022). |
