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Publications

Bernardes JS, Vieira F, Costa L, Zaverucha G.
Evaluation and improvements of clustering algorithms for detecting remote homologous protein families.
BMC Bioinformatics. 16(1), pp.34 (2015).
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J.
Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast.
Molecular Biology and Evolution. 32(1), (2015).
Fumagalli MR, Osella M, Thomen P, Heslot F, Cosentino Lagomarsino M.
Speed of evolution in large asexual populations with diminishing returns.
Journal of Theoretical Biology. 365, pp.23-31 (2015).
Fortunato AE, Annunziata R, Jaubert M, Bouly J-P, Falciatore A.
Dealing with light: The widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms.
J Plant Physiol. 172, pp.42-54 (2015).
IM Rouzine, Coffin JM, Weinberger LS.
Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo.
PLoS Genet. 10(2), pp.e1004179 (2014).
IM Rouzine, Razooky BS, Weinberger LS.
Stochastic variability in HIV affects viral eradication.
Proc Natl Acad Sci U S A. 111(37), pp.13251-2 (2014).
Batorsky R, Sergeev RA, IM Rouzine.
The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations.
PLoS Comput Biol. 10(10), pp.e1003878 (2014).
Zhu S, Riou M, C Yao A, Carvalho S, Rodriguez PC, Bensaude O, Paoletti P, Ye-Lehmann S.
Genetically encoding a light switch in an ionotropic glutamate receptor reveals subunit-specific interfaces.
Proc Natl Acad Sci U S A. 111(16), pp.6081-6 (2014).
Wang J, Ye-Lehmann S, Gautheret D, Lehmann J.
Development of a new method to identify aminoacylated RNA.
BIO Web of Conferences. 2, pp.05003 (2014).
Müller P, Bouly J-P, Hitomi K, Balland V, Getzoff ED, Ritz T, Brettel K.
ATP Binding Turns Plant Cryptochrome Into an Efficient Natural Photoswitch.
Scientific Reports. 4, pp.5175 - (2014).
Srinivasan R, Scolari VF, Cosentino Lagomarsino M, Seshasayee ASai Narain.
The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.
Nucleic Acids Research. (2014).
Kennard AS, Osella M, Javer A, Grilli J, Nghe P, Tans S, Cicuta P, Cosentino Lagomarsino M.
Individuality and universality in the growth-division laws of single E. coli cells.
(2014).
Baldassi C, Zamparo M, Feinauer C, Procaccini A, Zecchina R, Weigt M, Pagnani A.
Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners.
Hamacher K (Eds.). PLoS ONE. 9, pp.e92721 (2014).
Iacovelli F, Alves C, Falconi M, Oteri F, de Oliveira CLP, Desideri A.
Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family.
Walter NG (Eds.). Biopolymers. 101, pp.992–999 (2014).

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