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2016
Champeimont R, Laine E, Hu S-W, Penin F, Carbone A.
Coevolution analysis of Hepatitis C virus genome to identify the structural and functional dependency network of viral proteins.
Scientific Reports. 6, (2016).
Fortunato AE, Jaubert M, Enomoto G, Bouly J-P, Raniello R, Thaler M, Malviya S, Bernardes JS, Rappaport F, Gentili B, Huysman MJJ, Carbone A, Bowler C, Riberà d'Alcalà M, Ikeuchi M, Falciatore A.
Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.
The Plant Cell. 28(3), pp.616 - 628 (2016).
Karami Y, Laine E, Carbone A.
Dissecting protein architecture with communication blocks and communicating segment pairs.
BMC Bioinformatics. 17, pp.133–148 (2016).
Vamparys L, Laurent B, Carbone A, Sacquin-Mora S.
Great interactions: How binding incorrect partners can teach us about protein recognition and function.
Proteins. (2016).
Bernardes JS, Zaverucha G, Vaquero C, Carbone A.
Improvement in protein domain identification is reached by breaking consensus, with the agreement of many profiles and domain co-occurrence.
PLoS Computational Biology. 12(7), (2016).
Ripoche H, Laine E, Ceres N, Carbone A.
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.
Nucleic Acids Research. (2016).
Carbone A
L'encodage des réseaux évolutifs dans les protéines: de la séquence à la fonction.
in Leçon de mathématiques d'aujourd'hui. Cassini. (2016)
Vakirilis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel J-P, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G.
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.
Genome Res. (2016).
2013
Drillon G, Carbone A, Fischer G.
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs.
Journal of Logic and Computation. 23, pp.815–838 (2013).
Laine E, Carbone A
Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking.
in IEEE International Conference on Image Analysis and Processing (ICIAP) 2013 Workshops, LNCS 8158. Springer. pp. 318–325 (2013)
Mathelier A, Carbone A.
Large scale chromosomal mapping of human microRNA structural clusters.
Nucleic Acids Res. 41(8), pp.4392-408 (2013).

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